PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G025100.1.p
Common NameSb05g002080, SORBIDRAFT_05g002080
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 415aa    MW: 43036.6 Da    PI: 8.6144
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G025100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028234253120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           y+C+ Cgks+ ++  L  H 
  Sobic.005G025100.1.p 234 YTCKVCGKSYATNQALGGHA 253
                           9***********99997775 PP
2zf-C2H2157.1e-05287309123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C +Cgk+F +   L  H+r+H
  Sobic.005G025100.1.p 287 HECRKCGKVFASGVALGGHMRVH 309
                           78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-8234309No hitNo description
SMARTSM003550.72234256IPR015880Zinc finger, C2H2-like
PfamPF139129.6E-6234256IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.242234261IPR007087Zinc finger, C2H2
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-5285309IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0076287309IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-8287310IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.946287314IPR007087Zinc finger, C2H2
PROSITE patternPS000280289309IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSNPSLPIVP MAAATASPLR RRARDHPDDD VEDALELEAE GQLRGHESFD SDSTQDDDYA  60
PEARRLRLQH HRSPPRRRPR LQELDALDIL LLGPSLLLSP TPSVECESDA TLSDNDHHHG  120
RVGGGGGGNA TGSSSSAAGN SSSAAAAAAA ADAVGRGWDA TGKRGWKAGG RHRRRRVVLS  180
DSDSDLNTIS SKGEGQAGTT ASSSSLQAAP TAVHHQQPPP PPLQQQAAQR ATEYTCKVCG  240
KSYATNQALG GHAAGHKNKQ RRAASIAAAF PFPLGRGGAG GKADEPHECR KCGKVFASGV  300
ALGGHMRVHY TGPPIVPARK NKKRCLAPPP PAEGDIAVAA PPVGLSLALS IKTDEESPST  360
PPDAPAGAAV RAVRLFGIDV SPQVQQAPLP LQQQQQGSRG TSTEGSSSTV QQQH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G025100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC5Y4240.0C5Y424_SORBI; Uncharacterized protein
STRINGSb05g002080.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Representative plantOGRP1732523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.12e-12C2H2-like zinc finger protein