PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G014100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB
Protein Properties Length: 254aa    MW: 28714 Da    PI: 6.6091
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G014100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94e-172370148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W+++Ede+l+  ++ +G gtW+++a+  g++R++k+c++rw +yl
  Sobic.005G014100.1.p 23 KGLWSPDEDERLYSHITHYGVGTWSSVAELAGLKRSGKSCRLRWMNYL 70
                          678*******************************************97 PP
2Myb_DNA-binding48.42.1e-1576119146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           r + +++E++l+v + k+lG++ W++Ia++m+ gRt++++k++w++
  Sobic.005G014100.1.p  76 REPISKQEEDLIVSLQKLLGNR-WSAIAARMP-GRTDNEIKNYWNS 119
                           567799****************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.2221874IPR017930Myb domain
SMARTSM007175.8E-122272IPR001005SANT/Myb domain
SuperFamilySSF466892.1E-2822117IPR009057Homeodomain-like
PfamPF002496.5E-152370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-202477IPR009057Homeodomain-like
CDDcd001672.66E-102670No hitNo description
SMARTSM007179.4E-1475123IPR001005SANT/Myb domain
PROSITE profilePS5129417.47975125IPR017930Myb domain
PfamPF002492.1E-1377119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2378126IPR009057Homeodomain-like
CDDcd001671.26E-1078118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MERRKRAMVS DQLEQEDKKL MRKGLWSPDE DERLYSHITH YGVGTWSSVA ELAGLKRSGK  60
SCRLRWMNYL QPDLSREPIS KQEEDLIVSL QKLLGNRWSA IAARMPGRTD NEIKNYWNSR  120
IKKKLQQRMN TGGNYQSPLA VHQTAEERDA DMNTGGNPKA DLYGQAATTS EVQVHHSTTT  180
SYNNSADHPS LPHQLPLFTG QPLLDPNAAA IQNGEHTAAQ SSLDVSFSKS HERNFVEEYV  240
EFLMSLSDDL QEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-262112525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed specifically in guard cells (PubMed:16005292). Expressed in sink tissues, such as xylem, roots and developing seeds (PubMed:22708996). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:22708996}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G014100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278213e-76KJ727821.1 Zea mays clone pUT5773 MYB-related transcription factor (MYBR4) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448905.20.0transcription factor MYB57
SwissprotQ8VZQ26e-51MYB61_ARATH; Transcription factor MYB61
TrEMBLC5Y3I10.0C5Y3I1_SORBI; Uncharacterized protein
STRINGSb05g001215.11e-112(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP87032545
Representative plantOGRP1976222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.12e-53myb domain protein 61
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]