PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.005G013600.6.p | ||||||||
Common Name | Sb05g001175, SORBIDRAFT_05g001175 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 170aa MW: 18587.6 Da PI: 8.7139 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33.5 | 8.1e-11 | 6 | 47 | 22 | 59 |
EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 r YYrCt++ +Cp++k+v+++ ++dp ++ +tY ++H+++ Sobic.005G013600.6.p 6 RFYYRCTYKndmKCPATKQVQQKdTSDPPLFSVTYFNHHTCS 47 88******99999*******876157**************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 1.6E-8 | 2 | 48 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-13 | 5 | 46 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.3E-10 | 5 | 47 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-10 | 5 | 48 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 170 aa Download sequence Send to blast |
MAHGRRFYYR CTYKNDMKCP ATKQVQQKDT SDPPLFSVTY FNHHTCSTSS SAIGSARDIT 60 SQSSSKKAVS ICFSPHTASE QPSFLTSPAM PQSTIMHPYS ANQQSDRSAY AYQQLQWTGS 120 VPSHASNGPA KMEVDDSAQP SPSSSSTSAL SRTLLPIGQS RCIEYFHFL* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sbi.5502 | 0.0 | pollen| root| shoot |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.005G013600.6.p |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317523.1 | 1e-117 | probable WRKY transcription factor 48 | ||||
TrEMBL | A0A1Z5RG97 | 1e-121 | A0A1Z5RG97_SORBI; Uncharacterized protein | ||||
STRING | Sb05g001175.1 | 1e-117 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G11070.2 | 6e-10 | WRKY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.005G013600.6.p |
Entrez Gene | 8080015 |