PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G013600.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 228aa MW: 25245.9 Da PI: 8.7513 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 70 | 3.4e-22 | 44 | 105 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 dDg++WrKYG K+ +s+fpr YYrCt++ +Cp++k+v+++ ++dp ++ +tY ++H+++ Sobic.005G013600.4.p 44 DDGHQWRKYGEKKLSNSHFPRFYYRCTYKndmKCPATKQVQQKdTSDPPLFSVTYFNHHTCS 105 8***************************99999*******876157**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-23 | 33 | 105 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-22 | 36 | 106 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.065 | 38 | 107 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.7E-33 | 43 | 106 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-24 | 44 | 104 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MALDSVPPYP CDLGSSRAAA AARTQQRIRK DERTWTSDTY APYDDGHQWR KYGEKKLSNS 60 HFPRFYYRCT YKNDMKCPAT KQVQQKDTSD PPLFSVTYFN HHTCSTSSSA IGSARDITSQ 120 SSSKKAVSIC FSPHTASEQP SFLTSPAMPQ STIMHPYSAN QQSDRSAYAY QQLQWTGSVP 180 SHASNGPAKM EVDDSAQPSP SSSSTSALSR TLLPIGQSRC IEYFHFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-15 | 44 | 104 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.5502 | 0.0 | pollen| root| shoot |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G013600.4.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034784 | 1e-155 | BT034784.1 Zea mays full-length cDNA clone ZM_BFb0017P16 mRNA, complete cds. | |||
GenBank | EU953900 | 1e-155 | EU953900.1 Zea mays clone 1448775 WRKY46 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317523.1 | 1e-168 | probable WRKY transcription factor 48 | ||||
TrEMBL | A0A1Z5RGK4 | 1e-167 | A0A1Z5RGK4_SORBI; Uncharacterized protein | ||||
STRING | Sb05g001175.1 | 1e-131 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 3e-20 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G013600.4.p |