PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G353650.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 175aa MW: 19800.6 Da PI: 11.1556 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 8.9e-17 | 25 | 71 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 +WT+eEd +l ++ k+ G g+W+++ar m+ gR++ +c++rw+ +l Sobic.004G353650.1.p 25 AWTPEEDARLRRLAKENGFGHWHRVARGMPaPGRSARSCRHRWRHHL 71 7******************************************9886 PP | |||||||
2 | Myb_DNA-binding | 26.7 | 1.3e-08 | 79 | 121 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+ +de l ++v+++G ++Wk + r + gRt k rw+ Sobic.004G353650.1.p 79 PFTARDDEELRRLVARHGARRWKDVGRAVY-GRTSRVMKQRWRE 121 79***************************9.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.296 | 19 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-13 | 22 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.35E-15 | 24 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 25 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.48E-13 | 25 | 71 | No hit | No description |
Pfam | PF00249 | 1.2E-14 | 25 | 71 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.67E-10 | 75 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-4 | 76 | 125 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 10.247 | 77 | 127 | IPR017930 | Myb domain |
CDD | cd00167 | 9.46E-7 | 79 | 122 | No hit | No description |
Pfam | PF00249 | 1.5E-6 | 79 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-9 | 84 | 121 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MEESACSAGA PGTTGIVVRL RLPRAWTPEE DARLRRLAKE NGFGHWHRVA RGMPAPGRSA 60 RSCRHRWRHH LARDVYHRPF TARDDEELRR LVARHGARRW KDVGRAVYGR TSRVMKQRWR 120 EIRETTTATV QQRPGCYYDA DDILASTFAS CNLAMDAMDP RAGSLALGFA CMAV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-14 | 26 | 151 | 9 | 135 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-14 | 26 | 151 | 9 | 135 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G353650.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021315306.1 | 1e-125 | transcription factor MYB44-like | ||||
TrEMBL | A0A1Z5RQH7 | 1e-123 | A0A1Z5RQH7_SORBI; Uncharacterized protein | ||||
STRING | OGLUM07G11720.1 | 8e-61 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12569 | 20 | 35 | Representative plant | OGRP10428 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 2e-20 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G353650.1.p |