PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G350300.2.p
Common NameSb04g037720, SORBIDRAFT_04g037720
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 625aa    MW: 67992 Da    PI: 4.3007
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G350300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.42.8e-49191551128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknrat 78 
                           l+pGfrFhPtdeelv++yL+++v g++l++ ++i+evd+y++ePwdLp  +++++++ +wyfF++ d+k a          g+r+nrat
  Sobic.004G350300.2.p  19 LAPGFRFHPTDEELVSYYLRRRVLGRRLRV-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKVAgagaggrggPGNRTNRAT 106
                           579***************************.99***************5448999999***********99877777665577****** PP

                   NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +gyWk+tgkd+ev++ +g+ vg+kktLvf+ grapkge+t+Wvmheyrl
  Sobic.004G350300.2.p 107 PRGYWKTTGKDREVHH-RGKPVGMKKTLVFHAGRAPKGERTNWVMHEYRL 155
                           ****************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-5610173IPR003441NAC domain
PROSITE profilePS5100555.40819173IPR003441NAC domain
PfamPF023653.9E-2721155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MSLSPLDSSS PPAAAEVPLA PGFRFHPTDE ELVSYYLRRR VLGRRLRVDA IAEVDLYRLE  60
PWDLPSLSRI RSRDAQWYFF ARLDRKVAGA GAGGRGGPGN RTNRATPRGY WKTTGKDREV  120
HHRGKPVGMK KTLVFHAGRA PKGERTNWVM HEYRLLDADG PQDLHVVCRI FQKHGSGPQN  180
GAQYGAPYME EEWEEDDDAI ENGPTSGASA QMAAITCAVD EESNEDDENA YCETNRPARV  240
EPSHLPLVHE MLNPPEMAPQ QGQDSKETSD GSCADGAISL EEVLQEPLSN ISVENIGRLE  300
GQNATDDSIN VDDLLSAYPR KDNGYVGQDN TMNGSGPADG NDTNGVAYSG QQQADGFPAP  360
RQVDDSMVFY DAPSDYNLVD GNDDFVYLND LLNEPLGNES LFDGDDVMAY FDATENDFKY  420
DILGSAQGSN YQLADMPLNF AQKSDNKDKF TFDGISEVPE ANAQYGASSS GSHEDLYADT  480
EFPGVPTDDT ADKTYGKRLA SMLGSIPAPP AMASEFPPST GKSVGMLSAV SSSSIRVTAG  540
IIQLDGLTFS SGSDRWPLQK NGDLSLLVSF AVESDVSSKL PVGLEDATRI STVPMVMRSG  600
FYLFFMSAMI LLLSYKVGSC IYSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-44131559140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.61640.0embryo| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G350300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0641330.0BT064133.1 Zea mays full-length cDNA clone ZM_BFc0140G07 mRNA, complete cds.
GenBankBT0675810.0BT067581.1 Zea mays full-length cDNA clone ZM_BFc0097N06 mRNA, complete cds.
GenBankKJ7269850.0KJ726985.1 Zea mays clone pUT3686 NAC transcription factor (NAC26) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314954.10.0NAC domain-containing protein 78 isoform X3
TrEMBLA0A1Z5RQE50.0A0A1Z5RQE5_SORBI; Uncharacterized protein
STRINGSb04g037720.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.15e-62NAC domain containing protein 2