PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G349237.1.p | ||||||||
Common Name | Sb04g037590, SORBIDRAFT_04g037590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 194aa MW: 20079.9 Da PI: 5.3013 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8e-05 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C + F++ L H+++H Sobic.004G349237.1.p 57 YKCTFCRRGFPTAQALGGHMNVH 79 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.87E-6 | 54 | 83 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.7E-4 | 55 | 81 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 6.6E-6 | 57 | 81 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.533 | 57 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0061 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MELGPERKDD EGAGARASPS ASSPSCEADD NKDLPKQQQR AIGGGGGDDD EGTRQPYKCT 60 FCRRGFPTAQ ALGGHMNVHR RHRGRPAAVS AGAASVYDYD QQPCSTMTTS TTPVLAFAQQ 120 ATTTTRPAAG ALHAQRKPHE LLPLFGRGDC CSAGRGSGAA AGDVREDGYF AIAEEGDGGE 180 ELDLELRLGS AGS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G349237.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454798.1 | 1e-138 | transcriptional regulator SUPERMAN | ||||
TrEMBL | C5XW01 | 1e-137 | C5XW01_SORBI; Uncharacterized protein | ||||
STRING | Sb04g037590.1 | 1e-137 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14547 | 22 | 24 | Representative plant | OGRP1998 | 11 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 5e-12 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G349237.1.p |
Entrez Gene | 8055326 |