PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G337500.1.p
Common NameSb04g036520, SORBIDRAFT_04g036520
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 435aa    MW: 44725 Da    PI: 5.9307
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G337500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.5e-18351384134
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                           C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  Sobic.004G337500.1.p 351 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 384
                           *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.24E-14343407No hitNo description
PROSITE profilePS5011411.055345381IPR000679Zinc finger, GATA-type
SMARTSM004013.5E-16345395IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.6E-14349382IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.10E-14350407No hitNo description
PfamPF003201.2E-15351384IPR000679Zinc finger, GATA-type
PROSITE patternPS003440351376IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MAGGGFVEEM MREQSLLEAT CGDLFDHIDD LLDFPKEDSA ADVLLLDAPA PGSPLSARII  60
DVGRAGNALA PPAPPALAPP APAQHDASAS AFFAAAGHDV FDTKDVVGAH IGTCDDMDMD  120
MAQLEWLSGL FDDASIPHEP AFPAAAAGCA APIIKSSALA AGALLPPDKM EDALLFRSSS  180
PISVLEHGSF NNANGGSGSA GGSASSSSSS ASSSSESFSG SGSGSGGGHA WSAPVSPRQA  240
PPPPVLVIPA RARSKRSRPS AFTGAAARAG VVEAPTILVP TPMYSSGSSH SDPESIAESS  300
PHPAPPMKKK KKVKKPAPPA PAASSDDNDG DADYEEGGER AEPQGGAVRR CTHCQIEKTP  360
QWRAGPLGPK TLCNACGVRY KSGRLFPEYR PAASPTFVPS IHSNSHKKVV EMRQKAVRSG  420
DPSCDLLQFI RRRD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.1670.0leaf| ovary| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G337500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670670.0BT067067.1 Zea mays full-length cDNA clone ZM_BFb0175B18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453007.10.0GATA transcription factor 8
RefseqXP_021314242.10.0GATA transcription factor 8
RefseqXP_021314243.10.0GATA transcription factor 8
TrEMBLC5XV620.0C5XV62_SORBI; Uncharacterized protein
STRINGSb04g036520.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-37GATA family protein