PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G316500.4.p
Common NameSb04g034760, SORBIDRAFT_04g034760
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YA
Protein Properties Length: 244aa    MW: 26596.8 Da    PI: 10.96
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G316500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.87.7e-3374130158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           +ep+YVN+KQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R+RgsgGrF
  Sobic.004G316500.4.p  74 NEPIYVNPKQYHGILRRRQLRAKLEAQNKL-VKARKPYLHESRHLHAMKRARGSGGRF 130
                           59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.8E-3872133IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.65773133IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-2875130IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.0E-247698IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.0E-24107130IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRSTLSFDNK QSPFASQNID YGQTIACISY PYNHSGSGGV WAAYESGTTA TTVFHSQISG  60
GGARIPLPLE LAENEPIYVN PKQYHGILRR RQLRAKLEAQ NKLVKARKPY LHESRHLHAM  120
KRARGSGGRF LNTKQFQQQQ QSHTASTRST TNGTSSSGST HLRLGGGAAG DRSMLAPKTM  180
ASQDSSKKAV SSALAFTVTP MLHRDDAFLQ HPSHYLSFSG HFGQASVQAG MHNGSQHRVP  240
FMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-2174135263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G316500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9619770.0EU961977.1 Zea mays clone 239433 nuclear transcription factor Y subunit A-3 mRNA, complete cds.
GenBankKM6557510.0KM655751.1 Zea mays NF-YA13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314350.11e-180nuclear transcription factor Y subunit A-3 isoform X2
TrEMBLA0A1Z5RQ721e-180A0A1Z5RQ72_SORBI; Uncharacterized protein
STRINGSb04g034760.11e-180(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.16e-37nuclear factor Y, subunit A5