PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G302700.1.p
Common NameSb04g033590, SORBIDRAFT_04g033590
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family YABBY
Protein Properties Length: 255aa    MW: 26832.7 Da    PI: 7.7966
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G302700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY221.32.8e-68202125170
                 YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas..qllaaeshld..eslkee.................ll 72 
                           s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+      + +  +hl+  +sl  +                 l+
  Sobic.004G302700.1.p  20 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLlpPAAPPANHLNfgHSLLSPtsphglldelalqapslLM 108
                           578********************************************998443445555654224444447888977777765555333 PP

                 YABBY  73 eelkveeenlksnvekeesastsvssekl.........senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishr 150
                           e+   + ++ +++  +++s  ++     l         + +++ e+p++    v+rPPekrqrvPsaynrfik+eiqrika+nPdi+hr
  Sobic.004G302700.1.p 109 EQASANLSSSTMTGGSNSSCASN-----LpagpmpaakPVQQEPELPKTTApsVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHR 192
                           33333333333333222233333.....2344447877777888888754334************************************ PP

                 YABBY 151 eafsaaaknWahfPkihfgl 170
                           eafsaaaknWahfP+ihfgl
  Sobic.004G302700.1.p 193 EAFSAAAKNWAHFPHIHFGL 212
                           ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.5E-7021212IPR006780YABBY protein
SuperFamilySSF470956.81E-8150205IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.4E-4161204IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MMSSSSSSSA AFPLDHLAPS PTEQLCYVHC NCCDTILAVG VPCSSLFKTV TVRCGHCANL  60
LSVNLRGLLL PPAAPPANHL NFGHSLLSPT SPHGLLDELA LQAPSLLMEQ ASANLSSSTM  120
TGGSNSSCAS NLPAGPMPAA KPVQQEPELP KTTAPSVNRP PEKRQRVPSA YNRFIKDEIQ  180
RIKAGNPDIT HREAFSAAAK NWAHFPHIHF GLMPDQGLKK TFKTQDGAED MLLKDGLYAA  240
AAAAAAANMG ITPF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.210730.0panicle
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Preferentially expressed in immature organs containing meristems and organ primordia. Expressed in phloem of developing vascular tissues of young seedling shoots. Expressed in the phloem of midvein vasculature of young leaves. Does not show polar expression pattern in leaf primordia. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17676337}.
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G302700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9607730.0EU960773.1 Zea mays clone 228481 yabby15 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452852.10.0protein YABBY 4
SwissprotA2X7Q31e-130YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-130YAB4_ORYSJ; Protein YABBY 4
TrEMBLC5XS560.0C5XS56_SORBI; Uncharacterized protein
STRINGSb04g033590.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Representative plantOGRP46851123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.14e-64YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]