PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G285400.7.p | ||||||||
Common Name | Sb04g032140, SORBIDRAFT_04g032140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 595aa MW: 61369.7 Da PI: 8.7516 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 91 | 113 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Sobic.004G285400.7.p 91 FVCEVCNKGFQREQNLQLHRRGH 113 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00083 | 168 | 190 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +++ Sobic.004G285400.7.p 168 WKCDKCSKRYAVQSDWKAHSKVC 190 58*****************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.2E-6 | 90 | 113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.02E-7 | 90 | 113 | No hit | No description |
Pfam | PF12171 | 3.9E-5 | 91 | 113 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0041 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.094 | 91 | 113 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 290 | 133 | 163 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.8E-4 | 156 | 188 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.02E-7 | 163 | 188 | No hit | No description |
SMART | SM00355 | 140 | 168 | 188 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MASNSSAAAV AAMFGIRDAD HQDQMKPLLA QQHQQLLPPA PLLSAAASSS AVSGQATGAS 60 PPPVKKKRNL PDPDAEVIAL SPKTLLATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK 120 QKDPAQAQRR RVYLCPEPTC AHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ 180 SDWKAHSKVC GTREYRCDCG TLFSRRDSFI THRAFCDALA QESARLPPPG LTASHLYGAT 240 SAANMGLSLS QVGSHLASTL GADAHSHHQD LLRLGGGSAA SRLDHLLGPS NAASAFRPLP 300 PPPSSAFLMG APQEFAGDGD GTGSHGFLQG KPFHGLMHLP DLQGNGAGGP SASSAPGLFN 360 LGYIANSANS SGTSSHGHAS QGHLTSDQFS EGGGGGGGGG GGGGGGSESS AAMLFSGGGN 420 FSGGDHQVAP GGMYNNDPAV MLPQMSATAL LQKASQMGSS ASAQGGVSVF GGLVGSSAPS 480 AMHARPPMLD QSQMHLQSLM NSLAAGGMFG GANSGSMIDP RMYDMDQDVK FNQQGGRGGA 540 EMTRDFLGVG GGGVMRGMTV PRGGHQTDGA AGDMSSLEAE MKSASSPFTG SRMQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 164 | 226 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 164 | 226 | 3 | 65 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.17515 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G285400.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054258 | 0.0 | BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454495.1 | 0.0 | protein indeterminate-domain 4, chloroplastic isoform X2 | ||||
TrEMBL | C5Y1B0 | 0.0 | C5Y1B0_SORBI; Uncharacterized protein | ||||
STRING | Sb04g032140.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14580.2 | 1e-105 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G285400.7.p |
Entrez Gene | 8073914 |