PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G285400.6.p
Common NameSb04g032140, SORBIDRAFT_04g032140
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 595aa    MW: 61369.7 Da    PI: 8.7516
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G285400.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0591113123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ C+k F r  nL+ H r H
  Sobic.004G285400.6.p  91 FVCEVCNKGFQREQNLQLHRRGH 113
                           89*******************88 PP
2zf-C2H211.60.00083168190123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC +C+k++  +s+ k H +++
  Sobic.004G285400.6.p 168 WKCDKCSKRYAVQSDWKAHSKVC 190
                           58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.2E-690113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.02E-790113No hitNo description
PfamPF121713.9E-591113IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.004191113IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.09491113IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM00355290133163IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.8E-4156188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.02E-7163188No hitNo description
SMARTSM00355140168188IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MASNSSAAAV AAMFGIRDAD HQDQMKPLLA QQHQQLLPPA PLLSAAASSS AVSGQATGAS  60
PPPVKKKRNL PDPDAEVIAL SPKTLLATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK  120
QKDPAQAQRR RVYLCPEPTC AHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ  180
SDWKAHSKVC GTREYRCDCG TLFSRRDSFI THRAFCDALA QESARLPPPG LTASHLYGAT  240
SAANMGLSLS QVGSHLASTL GADAHSHHQD LLRLGGGSAA SRLDHLLGPS NAASAFRPLP  300
PPPSSAFLMG APQEFAGDGD GTGSHGFLQG KPFHGLMHLP DLQGNGAGGP SASSAPGLFN  360
LGYIANSANS SGTSSHGHAS QGHLTSDQFS EGGGGGGGGG GGGGGGSESS AAMLFSGGGN  420
FSGGDHQVAP GGMYNNDPAV MLPQMSATAL LQKASQMGSS ASAQGGVSVF GGLVGSSAPS  480
AMHARPPMLD QSQMHLQSLM NSLAAGGMFG GANSGSMIDP RMYDMDQDVK FNQQGGRGGA  540
EMTRDFLGVG GGGVMRGMTV PRGGHQTDGA AGDMSSLEAE MKSASSPFTG SRMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34164226365Zinc finger protein JACKDAW
5b3h_F1e-34164226365Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.175150.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G285400.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542580.0BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454495.10.0protein indeterminate-domain 4, chloroplastic isoform X2
TrEMBLC5Y1B00.0C5Y1B0_SORBI; Uncharacterized protein
STRINGSb04g032140.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-105C2H2-like zinc finger protein