PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G283201.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 334aa    MW: 36064.4 Da    PI: 9.5885
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G283201.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.73e-18163213155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           + ykGVr++   grWv+e+r+p   g ++r++lg+f tae+Aa+a++ a+++l+g
  Sobic.004G283201.1.p 163 PVYKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 213
                           68*****887.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-13163213IPR001471AP2/ERF domain
PROSITE profilePS5103222.089164221IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-21164222IPR016177DNA-binding domain
SMARTSM003806.0E-28164227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-30164223IPR001471AP2/ERF domain
CDDcd000182.61E-20165223No hitNo description
PRINTSPR003675.0E-8165176IPR001471AP2/ERF domain
PRINTSPR003675.0E-8187203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPARPHPRPP APRAPAGSDP LRARRARPLS PSPEHPLPDR PIKSHYLAGA SRAAPRWNSA  60
RGHVALHALT YITRHLSLQI SNQMLRHTFL LPPARHGHHH TRPSPMDAAS FSDYSSGTPS  120
PVGGVSGGVD GDDGGSSSSY MTVSSAPPKR RAGRTKFKET RHPVYKGVRR RNPGRWVCEV  180
REPHGKQRIW LGTFETAEMA ARAHDVAALA LRGRAACLNF ADSPRLLRVP PMGSGHDEIR  240
RAAAVAADQF RPAPDRQGNV ATAEEAADTT PLDATTQSVV DDPYCIIDDR LDFGMQGYLD  300
MAQGMLIDPP PMAGSSTSGG DDDDDGEVKL WSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-141622201271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00644PBMTransfer from LOC_Os02g45450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G283201.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278730.0KJ727873.1 Zea mays clone pUT5966 AP2-EREBP transcription factor (EREB16) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454484.20.0dehydration-responsive element-binding protein 1G
SwissprotA2XWL66e-96DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
SwissprotQ6EP778e-96DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G
SwissprotQ8H2736e-96DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBLA0A1Z5RPX10.0A0A1Z5RPX1_SORBI; Uncharacterized protein
STRINGSb04g031950.11e-164(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.17e-36C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]
  3. Li S, et al.
    Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.
    Front Plant Sci, 2016. 7: p. 465
    [PMID:27148296]