PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G264200.1.p
Common NameSb04g030230, SORBIDRAFT_04g030230
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 307aa    MW: 31567 Da    PI: 5.7616
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G264200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66e-10222263955
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            ++RR+ri +++ +L+el+P+      +K++ +++LekA+ Y+k Lq
  Sobic.004G264200.1.p 222 AKNRRERISERLRTLQELVPNG-----TKVDLVTMLEKAISYVKFLQ 263
                           69******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-12214270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-13214273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-12215267No hitNo description
SMARTSM003537.1E-12219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-7222263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048766Biological Processroot hair initiation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MALVREHGGY GGFDSAEAAA FDALGYGYGY GHGALLGFDA SAALFGEGAS AYVSDAGDAW  60
TGAGSSTVLA FDRNTPAAAA AAAAAVVEEE EEESDAWIDA MDQSYGAGAA TAPEARHALT  120
SSVGFDASTG CFTLTERSSP SSSSGGAGRP FGLLFPSTSS GAGGTPERAA AAPVRRAPQK  180
RTYVSAEPQA VSPKKHCGAG RKASKAKSPS TTPTKDPQSL AAKNRRERIS ERLRTLQELV  240
PNGTKVDLVT MLEKAISYVK FLQLQVKVLA TDEFWPAQGG KAPEISQVRE ALDAILSSAS  300
QRGQLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G264200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096621e-125AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454405.10.0transcription factor bHLH83
TrEMBLC5Y0850.0C5Y085_SORBI; Uncharacterized protein
STRINGSb04g030230.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-53ROOT HAIR DEFECTIVE6