PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.004G238400.1.p | ||||||||
Common Name | Sb04g028040, SORBIDRAFT_04g028040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 240aa MW: 27930.8 Da PI: 8.3442 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 88.5 | 5.5e-28 | 69 | 119 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +ke+++e++s++Fs pik+AA+eL+v++TvLK++CR++GI+RWPhRk+ksl Sobic.004G238400.1.p 69 KKELTFEQVSRHFSVPIKQAARELNVGVTVLKKQCRKLGIPRWPHRKVKSL 119 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.28 | 54 | 139 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.6E-23 | 72 | 119 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MEDRRFYEED DWYFQFQDFS FWAQMEEKED AHRKSKEGDC EMAPIESANV QTTAAEIPGH 60 RGGGSSETKK ELTFEQVSRH FSVPIKQAAR ELNVGVTVLK KQCRKLGIPR WPHRKVKSLQ 120 KLIDNVQGLG KENAQENEHL TRSLVGFMQQ TMKLLGERPD VMLDQRTEEI SQVCFKDKEN 180 NAQEEGHLIR SVVEFLQLTK KMIQERPDVI LDQRTKHLRQ VCFKESFKRK RLVGGHGTW* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.004G238400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452555.1 | 1e-163 | protein RKD3 | ||||
TrEMBL | A0A1Z5RPV3 | 1e-178 | A0A1Z5RPV3_SORBI; Uncharacterized protein | ||||
STRING | Sb04g028040.1 | 1e-162 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 | Representative plant | OGRP567 | 17 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G18790.1 | 2e-30 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.004G238400.1.p |
Entrez Gene | 8075710 |