PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G237100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 366aa    MW: 39847 Da    PI: 5.1627
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G237100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.6e-15178237155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s ++GV++++++g+++A+++d  +   g  ++ k+++lg+++t+e+Aa+a++ a+ k++g
  Sobic.004G237100.1.p 178 SSFHGVTRHRWSGKYEAHLWDsSCRvEGrrRKgKQVYLGSYDTEEKAARAYDVAAIKYWG 237
                           5799*****************877786666336************************997 PP
2AP249.31.2e-15280331155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV+++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  Sobic.004G237100.1.p 280 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 331
                           57****************9995.....234************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-18178247IPR016177DNA-binding domain
CDDcd000182.90E-20178246No hitNo description
PfamPF008474.0E-12179237IPR001471AP2/ERF domain
SMARTSM003803.2E-28179251IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-17179246IPR001471AP2/ERF domain
PROSITE profilePS5103219.296179245IPR001471AP2/ERF domain
PRINTSPR003671.4E-5180191IPR001471AP2/ERF domain
PfamPF008471.7E-9280331IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-17280341IPR016177DNA-binding domain
CDDcd000182.56E-22280339No hitNo description
SMARTSM003802.2E-27281345IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-19281340IPR001471AP2/ERF domain
PROSITE profilePS5103218.571281339IPR001471AP2/ERF domain
PRINTSPR003671.4E-5321341IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEESDVGVNP GKQMEEDKAA GVSGDEGKIE RSHSINLNRA PTVAVEARST QGNVETHGAV  60
VSGTKDAGTG KAEQSSGDGQ EKLPKCEQVD YESEIEGCVD DENPVKKAAL VTLVGNEYCG  120
GDDDERVQVL TIVKKDEPAD DIGDCINPGT VAGYSEVKGA VGASAATSAV RPAGSRSSSF  180
HGVTRHRWSG KYEAHLWDSS CRVEGRRRKG KQVYLGSYDT EEKAARAYDV AAIKYWGGNT  240
RLNFPIEQYG KELEDIRDLS REECVTYLRR RSSCFSRGAS IYRGVTRRQK DGRWQARIGL  300
VAGTRDIYLG TFKTEEEAAE AYDIAAIEIR GKNAVTNFDR SNYVDKGMHC IEGEGLRLLA  360
SKPEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204211GRRRKGKQ
2268289RRRSSCFSRGASIYRGVTRRQK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G237100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9574600.0EU957460.1 Zea mays clone 1593084 protein BABY BOOM 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314849.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE12e-82AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ6PQQ31e-81AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A194YRE60.0A0A194YRE6_SORBI; Uncharacterized protein
STRINGSb04g027940.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.17e-72AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]