PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G209600.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | FAR1 | ||||||||
Protein Properties | Length: 875aa MW: 99723.7 Da PI: 6.6638 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 45.7 | 2.2e-14 | 114 | 197 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 k+Y++YA++ GFs + ks++ ++g + + Cs+ g+ + + +r++t+++C a++ +k+++d ++++ +leHnH+l Sobic.004G209600.4.p 114 KYYKQYAEDSGFSAIILKSSYL-KSGVCRRLVIGCSRAGRGRANACY-----LSRESTKINCPARISLKLRQDRWLHIDDAKLEHNHPL 196 69*************9999998.7888***************99998.....999****************99999************9 PP FAR1 90 a 90 + Sobic.004G209600.4.p 197 N 197 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-11 | 114 | 197 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.3E-24 | 300 | 393 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.78 | 587 | 625 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.5E-5 | 598 | 621 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0047 | 600 | 627 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 875 aa Download sequence Send to blast |
MSHGVPAPML EELAREATLA DVSILVDGNG AEVHGNDTEV HGNGAVLKRV DVPQVREVQD 60 LGGISPKEVP LHEGKEVILV DDNDSGQEDG GEGKVDENAP RVGLRFKTYD DALKYYKQYA 120 EDSGFSAIIL KSSYLKSGVC RRLVIGCSRA GRGRANACYL SRESTKINCP ARISLKLRQD 180 RWLHIDDAKL EHNHPLNQSS TSLINCYKKL TDAKNGGAAS RLKGRRNIPS EKEQGNFTEI 240 GRLKFGEGDD EYIQRFFGNM QNKNPYFFYL VDLDHQGRLR NLFWSDARSR AANDYFGHDV 300 VYFDTSYLTE KYDLPLVFFT GMNNHGQPVL FGTGLLSDLS ADSYAWLFRA FLSCMKGLCP 360 KAIITEHYNA ILDAVQEVLP DVRHRLCLYR IMKDVAENLK EHAEFKTIKK ALKKVTYGSL 420 KIPEFETDWK KIIEEHGLGE NGCLSSLYEH RQLWAPAYLR DKFWAGMSIS QRGESISSYY 480 DGFVYPKTSL KQFFSKYEMI LENKYKKEWQ ADEESSHRSP LTVTKFYMEE QLAKAYTINM 540 FRKFQDELKA TMYCDGMPIK VDGRLVTFEV KECSYMEDGK DTESRTYEVY FCKEEPKVEI 600 ECECGFVQFT GILCRHALSV LKLQEIFEIP KDYVLDRWRR DYKKLYSNAK KPNEMPLSDI 660 VEHSDYLFTQ CSQLLNLGFV SESRYLVALK LLREAERSLL DDGLPARDRQ PMLLSFEADA 720 PENGQGLFNP QFSEGVKNSQ SAHAKRRGRP PKKVTESNDD TVTQPNKEQD FLRSSFVTDN 780 TNMIQGPSSA SHLEGPHMGV QGGIDLMEGI PNLSFGNHFG MDINHQHQVP SHQRMQQNNF 840 IQVQAEPHGF GNQWVYHPML QDNPVLRTPT RRAG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.20209 | 0.0 | embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G209600.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021315381.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like isoform X1 | ||||
Refseq | XP_021315382.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like isoform X1 | ||||
Refseq | XP_021315383.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like isoform X1 | ||||
TrEMBL | A0A194YQU3 | 0.0 | A0A194YQU3_SORBI; Uncharacterized protein | ||||
STRING | Sb04g025520.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-114 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G209600.4.p |