PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G209600.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 870aa    MW: 99112 Da    PI: 6.6637
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G209600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.72.2e-14109192190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           k+Y++YA++ GFs  + ks++  ++g + +    Cs+ g+ + +         +r++t+++C a++ +k+++d   ++++ +leHnH+l
  Sobic.004G209600.2.p 109 KYYKQYAEDSGFSAIILKSSYL-KSGVCRRLVIGCSRAGRGRANACY-----LSRESTKINCPARISLKLRQDRWLHIDDAKLEHNHPL 191
                           69*************9999998.7888***************99998.....999****************99999************9 PP

                  FAR1  90 a 90 
                           +
  Sobic.004G209600.2.p 192 N 192
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-11109192IPR004330FAR1 DNA binding domain
PfamPF105512.2E-24295388IPR018289MULE transposase domain
PROSITE profilePS509669.78582620IPR007527Zinc finger, SWIM-type
PfamPF044342.5E-5593616IPR007527Zinc finger, SWIM-type
SMARTSM005750.0047595622IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MSHGVPAPML EELAREATLA DVSILVDGNG AEVHGNDTEV HGNGAVLKRV DVPQDLGGIS  60
PKEVPLHEGK EVILVDDNDS GQEDGGEGKV DENAPRVGLR FKTYDDALKY YKQYAEDSGF  120
SAIILKSSYL KSGVCRRLVI GCSRAGRGRA NACYLSREST KINCPARISL KLRQDRWLHI  180
DDAKLEHNHP LNQSSTSLIN CYKKLTDAKN GGAASRLKGR RNIPSEKEQG NFTEIGRLKF  240
GEGDDEYIQR FFGNMQNKNP YFFYLVDLDH QGRLRNLFWS DARSRAANDY FGHDVVYFDT  300
SYLTEKYDLP LVFFTGMNNH GQPVLFGTGL LSDLSADSYA WLFRAFLSCM KGLCPKAIIT  360
EHYNAILDAV QEVLPDVRHR LCLYRIMKDV AENLKEHAEF KTIKKALKKV TYGSLKIPEF  420
ETDWKKIIEE HGLGENGCLS SLYEHRQLWA PAYLRDKFWA GMSISQRGES ISSYYDGFVY  480
PKTSLKQFFS KYEMILENKY KKEWQADEES SHRSPLTVTK FYMEEQLAKA YTINMFRKFQ  540
DELKATMYCD GMPIKVDGRL VTFEVKECSY MEDGKDTESR TYEVYFCKEE PKVEIECECG  600
FVQFTGILCR HALSVLKLQE IFEIPKDYVL DRWRRDYKKL YSNAKKPNEM PLSDIVEHSD  660
YLFTQCSQLL NLGFVSESRY LVALKLLREA ERSLLDDGLP ARDRQPMLLS FEADAPENGQ  720
GLFNPQFSEG VKNSQSAHAK RRGRPPKKVT ESNDDTVTQP NKEQDFLRSS FVTDNTNMIQ  780
GPSSASHLEG PHMGVQGGID LMEGIPNLSF GNHFGMDINH QHQVPSHQRM QQNNFIQVQA  840
EPHGFGNQWV YHPMLQDNPV LRTPTRRAG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.202090.0embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G209600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315387.10.0protein FAR1-RELATED SEQUENCE 6-like isoform X4
RefseqXP_021315388.10.0protein FAR1-RELATED SEQUENCE 6-like isoform X4
TrEMBLA0A194YRZ00.0A0A194YRZ0_SORBI; Uncharacterized protein
STRINGSb04g025520.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-114FAR1-related sequence 6