PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G209600.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 875aa    MW: 99723.7 Da    PI: 6.6638
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G209600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.72.2e-14114197190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           k+Y++YA++ GFs  + ks++  ++g + +    Cs+ g+ + +         +r++t+++C a++ +k+++d   ++++ +leHnH+l
  Sobic.004G209600.1.p 114 KYYKQYAEDSGFSAIILKSSYL-KSGVCRRLVIGCSRAGRGRANACY-----LSRESTKINCPARISLKLRQDRWLHIDDAKLEHNHPL 196
                           69*************9999998.7888***************99998.....999****************99999************9 PP

                  FAR1  90 a 90 
                           +
  Sobic.004G209600.1.p 197 N 197
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-11114197IPR004330FAR1 DNA binding domain
PfamPF105512.3E-24300393IPR018289MULE transposase domain
PROSITE profilePS509669.78587625IPR007527Zinc finger, SWIM-type
PfamPF044342.5E-5598621IPR007527Zinc finger, SWIM-type
SMARTSM005750.0047600627IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MSHGVPAPML EELAREATLA DVSILVDGNG AEVHGNDTEV HGNGAVLKRV DVPQVREVQD  60
LGGISPKEVP LHEGKEVILV DDNDSGQEDG GEGKVDENAP RVGLRFKTYD DALKYYKQYA  120
EDSGFSAIIL KSSYLKSGVC RRLVIGCSRA GRGRANACYL SRESTKINCP ARISLKLRQD  180
RWLHIDDAKL EHNHPLNQSS TSLINCYKKL TDAKNGGAAS RLKGRRNIPS EKEQGNFTEI  240
GRLKFGEGDD EYIQRFFGNM QNKNPYFFYL VDLDHQGRLR NLFWSDARSR AANDYFGHDV  300
VYFDTSYLTE KYDLPLVFFT GMNNHGQPVL FGTGLLSDLS ADSYAWLFRA FLSCMKGLCP  360
KAIITEHYNA ILDAVQEVLP DVRHRLCLYR IMKDVAENLK EHAEFKTIKK ALKKVTYGSL  420
KIPEFETDWK KIIEEHGLGE NGCLSSLYEH RQLWAPAYLR DKFWAGMSIS QRGESISSYY  480
DGFVYPKTSL KQFFSKYEMI LENKYKKEWQ ADEESSHRSP LTVTKFYMEE QLAKAYTINM  540
FRKFQDELKA TMYCDGMPIK VDGRLVTFEV KECSYMEDGK DTESRTYEVY FCKEEPKVEI  600
ECECGFVQFT GILCRHALSV LKLQEIFEIP KDYVLDRWRR DYKKLYSNAK KPNEMPLSDI  660
VEHSDYLFTQ CSQLLNLGFV SESRYLVALK LLREAERSLL DDGLPARDRQ PMLLSFEADA  720
PENGQGLFNP QFSEGVKNSQ SAHAKRRGRP PKKVTESNDD TVTQPNKEQD FLRSSFVTDN  780
TNMIQGPSSA SHLEGPHMGV QGGIDLMEGI PNLSFGNHFG MDINHQHQVP SHQRMQQNNF  840
IQVQAEPHGF GNQWVYHPML QDNPVLRTPT RRAG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.202090.0embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G209600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315381.10.0protein FAR1-RELATED SEQUENCE 6-like isoform X1
RefseqXP_021315382.10.0protein FAR1-RELATED SEQUENCE 6-like isoform X1
RefseqXP_021315383.10.0protein FAR1-RELATED SEQUENCE 6-like isoform X1
TrEMBLA0A194YQU30.0A0A194YQU3_SORBI; Uncharacterized protein
STRINGSb04g025520.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1458844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-114FAR1-related sequence 6