PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G184400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 423aa    MW: 44890.5 Da    PI: 8.453
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G184400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix452.8e-1463144286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++   s +qCk++++ l+k+yk +k+   +        ++yfd+l+
  Sobic.004G184400.1.p  63 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKapkSDVQCKNRIDTLKKKYKIEKAKHDS-------DWRYFDRLD 144
                           *************************************87788876222667***************9998886.......59****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.5E-2361146No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MDDDGAASRS PSRSPSRSPS RSPSPLPVAD PVTVAAAPPG HVAVAIPLRK PSPSSGGGRE  60
DAWSDGATST LIDAWGERFV ALGRGSLRHP QWQEVAEVVS SRDGYSKAPK SDVQCKNRID  120
TLKKKYKIEK AKHDSDWRYF DRLDDLLAPV LKLNSSSSSS AAAAAAAAAA AAARSAGPMV  180
PPRINFPQRT RTPLHSSAGG KRRMPPSPPP QPSASSDSSD GFPPSSGVAN GKRLQRVEEP  240
LAVAAANGGA ESSSVSRAQG LRDLAQAIRR LGEVYERVEN ARREQELRME RDRLESARQM  300
EEQRVQFFLK MQMELSKAAM GGGDAAATTA PMAMAVPIPA DGNGTRRAGV TAEVATSSNH  360
RVRYRIKAGS SRHHHPAPPQ QAHYQNSTSP TGGDGDGNGS DSDNKEAAQE EDAEDEEEEE  420
SQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.49510.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G184400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315676.10.0trihelix transcription factor ASIL1
TrEMBLA0A194YQF90.0A0A194YQF9_SORBI; Uncharacterized protein
STRINGSb04g023340.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-36sequence-specific DNA binding transcription factors