PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G170700.1.p
Common NameSb04g022190, SORBIDRAFT_04g022190
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 410aa    MW: 46180.1 Da    PI: 6.552
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G170700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.18.4e-2294191185
              trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                           +Wt  +v++L++a+++++e++ ++             ++k++W+ vs++m+ergf +sp+qC++k+++lnkryk+++e+ +++ +++ +
  Sobic.004G170700.1.p  94 KWTSGMVKLLVTAVSYIDEDVDADYgtssgrrkhallKRKGKWRLVSSAMAERGFAVSPQQCEDKFNDLNKRYKRLTEILGRGrACQIV 182
                           7**************999999976334457778888899******************************************99679999 PP

              trihelix  77 stcpyfdql 85 
                           +++ ++dq+
  Sobic.004G170700.1.p 183 EKHELLDQV 191
                           999998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-2092217No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEGNLPPPPT LIPGGGGGGG GAHFDLGQPF HFAAQPQAAV QVHQGGVFAV PAANQMPELG  60
NAVKVSLSDE EDADDGHLDH GKAEAAASPW HRVKWTSGMV KLLVTAVSYI DEDVDADYGT  120
SSGRRKHALL KRKGKWRLVS SAMAERGFAV SPQQCEDKFN DLNKRYKRLT EILGRGRACQ  180
IVEKHELLDQ VSLSGKLREE AKKHLNSKHL HYEEMCSYHN RNRICLLDDP ALRRFLRMAL  240
RGPDEQGKKC LFGYDDDDDQ MLLSDDDDYY EDDELHDNLE ASAEDHGVHR VHATKKLKHD  300
HGEGHCGSHL SEVAAIDMNR MFSEGSGGPS AEKNLSAVRA QIERERLDIK SQMLRIEQRH  360
FKWLKFSREK DRELEKMKLE NEKMKLENER LELELKLKEI EMGIKPTRI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.207040.0embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G170700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279500.0KJ727950.1 Zea mays clone pUT6048 trihelix transcription factor (THX42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452238.10.0uncharacterized protein LOC8061037
TrEMBLC5XU420.0C5XU42_SORBI; Uncharacterized protein
STRINGSb04g022190.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127742636
Representative plantOGRP1303645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-59sequence-specific DNA binding transcription factors