PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G168100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 260aa MW: 28239.5 Da PI: 8.6427 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.7 | 7.2e-19 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ri n+s r tf kRr+g++KKA+EL +LCd++ +v+++++ Sobic.004G168100.1.p 10 RIANDSTRRGTFKKRRKGLMKKASELATLCDVDTCVVVYGE 50 89*************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-22 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.642 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.44E-31 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 3.4E-23 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-12 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-18 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-12 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-12 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MARKKVTLHR IANDSTRRGT FKKRRKGLMK KASELATLCD VDTCVVVYGE GESQAEVWPD 60 VPTAEHVLAR FKAVPELDQC KKMLDMEGFL KQRMDKLRDQ LHKAQRDNRE REATLLLHDA 120 IAGRRPGLVG LSVEEIASLG CMVESRLRGV KDAIERLQRM GQEVPAATVA QPQAPSSMPL 180 MPAYSAGTAG DRDMTMMQVP HQQAGWLVGG GDLGALVHGG FGAGTTSGAG GDMNMMMPQF 240 GNMAVGFAWS DPGQYFHSI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVTLHRIANDSTRRGTFKKRR |
2 | 21 | 25 | KKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G168100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002453942.2 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | C5XU07 | 0.0 | C5XU07_SORBI; Uncharacterized protein | ||||
STRING | Sb04g021950.1 | 1e-124 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-31 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G168100.1.p |