PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G151500.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 249aa    MW: 28055 Da    PI: 10.28
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G151500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.21.5e-11125166351
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                            +GV++  k+ +W A I++      +k+++lg+ gt +eAa+++++a+ 
  Sobic.004G151500.3.p 125 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQDEAARLYDRAAF 166
                           79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.966100179IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-8124169IPR016177DNA-binding domain
PfamPF008478.4E-6124167IPR001471AP2/ERF domain
SMARTSM003801.3E-4124181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-6127171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MIVDRAILCS RMSVWRLIAR RGGISSMVSL RRRRLLGLCS GKDSLPVDLP KPIENEKTVE  60
VVHSNVKPFS VHPLPLAKTS DVLTKSSNGS DDSKEEKTQY YPGKEIKRRK RHRRKQYVDQ  120
EPCIMRGVYF KNMKWQAAIK VDKKQIHLGT VGTQDEAARL YDRAAFMCGR EPNFELSEEE  180
KQELRKYTWE GFLAVTRNTI TSKKQRKVGL PRRSKADLFM GQSDGDTEMA NGGGSSNSDN  240
GDAETSAS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.80791e-176leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G151500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0648790.0BT064879.1 Zea mays full-length cDNA clone ZM_BFb0311A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315359.10.0ethylene-responsive transcription factor-like protein At4g13040 isoform X2
TrEMBLA0A1Z5RMQ80.0A0A1Z5RMQ8_SORBI; Uncharacterized protein
STRINGSb04g020150.11e-147(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Representative plantOGRP80221215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.27e-46ERF family protein