PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G138400.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 300aa    MW: 32037.6 Da    PI: 10.2315
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G138400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.4e-30221279259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+  +p ++++tYeg+H+h+
  Sobic.004G138400.2.p 221 ADDYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPGEPAMLIVTYEGDHRHD 279
                           69************************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.0E-16173218IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.9E-32207280IPR003657WRKY domain
PROSITE profilePS5081130.194215281IPR003657WRKY domain
SuperFamilySSF1182901.24E-25216279IPR003657WRKY domain
SMARTSM007741.6E-34220280IPR003657WRKY domain
PfamPF031063.2E-25222278IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MITIDDLLRS CGGDSGSIPV PSSDDGRQML AMGDHHQLTV SRIRTAVSML NRRTGHARFR  60
RGPVVAEQHA SARPGVVALD FVNKACEARF SASASGTSSS LPSSLTVTAG EGSVSNGRAQ  120
PQGQYPFQPV SGGGGSDGHS ARKPLPLAVS MQQQQHASPD HSAPAGTALK NGKCHDRARS  180
ENDAGGKTHG HRCHCSKKRK SRVKRTVRVP AISSRNADIP ADDYSWRKYG QKPIKGSPYP  240
RGYYKCSTVR GCPARKHVER DPGEPAMLIV TYEGDHRHDD QQQERSAGGA QTDHTTTSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-202182791272WRKY transcription factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in aleurone cells. In seeds, predominantly present in the plumule, radicle and scutellum of the embryo. {ECO:0000250|UniProtKB:Q0JEE2}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G138400.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0946852e-96FP094685.1 Phyllostachys edulis cDNA clone: bphyem111b06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645677.11e-125WRKY transcription factor WRKY51 isoform X2
SwissprotQ6IEN15e-66WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLA0A1Z5RMC80.0A0A1Z5RMC8_SORBI; Uncharacterized protein
STRINGSb04g016540.11e-166(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Representative plantOGRP1972422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.17e-54WRKY DNA-binding protein 11