PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G040000.1.p
Common NameSb04g003450, SORBIDRAFT_04g003450
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HB-PHD
Protein Properties Length: 731aa    MW: 81698.6 Da    PI: 6.6456
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G040000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.5e-09452495952
                           HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
              Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                           +  +e+L ++F++n  p ++ +e L+++lg++ +++  WF+N R
  Sobic.004G040000.1.p 452 PAAVEVLRRAFAENELPPRDVKENLSRELGISFEKIDKWFKNTR 495
                           67799*************************************99 PP
2PHD322.9e-11197251150
                           SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                   PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                           +C+ C++  s  ++++++C+g Ck+++H kCl+++l++   p +   wlC+ C +
  Sobic.004G040000.1.p 197 MCSTCKSheSFPSNKFIFCEGpCKRAYHEKCLEPPLNKGVLPTSshGWLCKFCLC 251
                           6******65555********88***************999998899*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.87E-13189255IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.1E-11194252IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.095195252IPR019787Zinc finger, PHD-finger
PfamPF006287.9E-9197251IPR019787Zinc finger, PHD-finger
SMARTSM002495.3E-6197250IPR001965Zinc finger, PHD-type
PROSITE patternPS013590198249IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.605.1E-11437495IPR009057Homeodomain-like
SuperFamilySSF466899.41E-10438503IPR009057Homeodomain-like
SMARTSM003894.1E-9441505IPR001356Homeobox domain
PROSITE profilePS5007111.855441501IPR001356Homeobox domain
CDDcd000861.10E-8445505No hitNo description
PfamPF000462.1E-6452495IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MHSSENILVF SNSGRSSKGR NETSMELVPV PNRPTRSDAS RQCKSDSPLK RSQRKVRNAT  60
LAKSIKNKYH CSPLKQRRGS DSVAGKIVTG LTARRRKKRK MQNTDEATRL ERRARYFLIK  120
IKLEQNLLDA YSGDGWNGQS REKIKPEKEL QRARKQIIKC KIAIRDIIRQ LCLYTSTGSV  180
DDPAMPPDQF TNPEHTMCST CKSHESFPSN KFIFCEGPCK RAYHEKCLEP PLNKGVLPTS  240
SHGWLCKFCL CKVKILETIN AHLGTSFTVM CSFEDIFKEA TEQIDSEDAL DEDWLSEYSG  300
DEDYDPDENE DSDNCMDSGE EIMSDDSNGS GSPLYSPNDD IPDFISADLN DVEGFCHANL  360
DLGIDAGEDD LAQILTYQRP RRDVDYRRLN EEMFGKIMGN EEQSEDEDWG HERRKKRRTR  420
SGGAGDNSVG FSNVISDEKS QKKGRKLFRI PPAAVEVLRR AFAENELPPR DVKENLSREL  480
GISFEKIDKW FKNTRCAALR DRKAEGNSHN TALSKSSRNK GKAGISGKAE RNDHVTGPCN  540
NSRTNEEKSG ISGKVDSVDN SCLVPLSEII NVHTRVQHNL EMRKMESTSS PVWLHNEGGC  600
LFPTLQAKES TLPTSKPCLP SEISHPTTNE VGTLVQATSW MDAGACIEQQ ETTPWVDTGA  660
SGYQPFLDVI DEMCGLECRL QRLKENMFSS GMDGRTAGVS DMGNQAVVLV PTAELKEKAP  720
HGGLFGHYCP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192100ARRRKKRKM
29398RRRKKR
39399RRRKKRK
493100RRRKKRKM
5413419RKKRRTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G040000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9489540.0EU948954.1 Zea mays clone 391409 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451539.20.0pathogenesis-related homeodomain protein isoform X1
TrEMBLC5XUM80.0C5XUM8_SORBI; Uncharacterized protein
STRINGSb04g003450.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85502227
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-82pathogenesis related homeodomain protein A