PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G406800.1.p
Common NameSb03g044170, SORBIDRAFT_03g044170
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18094 Da    PI: 9.0314
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G406800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.91.8e-251160251
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          rie+k  rqv fskRr+g++KKA+EL  LCdaeva+++fs+ gklyeyss
  Sobic.003G406800.1.p 11 RIEDKASRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPGGKLYEYSS 60
                          8***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-33261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.763262IPR002100Transcription factor, MADS-box
CDDcd002655.96E-41379No hitNo description
PRINTSPR004041.0E-26424IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-30481IPR002100Transcription factor, MADS-box
PfamPF003195.5E-251158IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-262439IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-263960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MARRGRVELR RIEDKASRQV RFSKRRAGLF KKAFELALLC DAEVALLVFS PGGKLYEYSS  60
TSIEDTYDRY QQFAGAGRNV NGDNNDNPDV AASDLQSRLK EIATWSEQHN AEESDANELE  120
KLEKLLANAL RNTKTKRMLA KQNNGGAGTS TGNQNSNGPS SHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-18473271Myocyte-specific enhancer factor 2A
3kov_B2e-18473271Myocyte-specific enhancer factor 2A
3kov_I2e-18473271Myocyte-specific enhancer factor 2A
3kov_J2e-18473271Myocyte-specific enhancer factor 2A
3p57_A2e-18473271Myocyte-specific enhancer factor 2A
3p57_B2e-18473271Myocyte-specific enhancer factor 2A
3p57_C2e-18473271Myocyte-specific enhancer factor 2A
3p57_D2e-18473271Myocyte-specific enhancer factor 2A
3p57_I2e-18473271Myocyte-specific enhancer factor 2A
3p57_J2e-18473271Myocyte-specific enhancer factor 2A
5f28_A2e-18473372MEF2C
5f28_B2e-18473372MEF2C
5f28_C2e-18473372MEF2C
5f28_D2e-18473372MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.96080.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10382970}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G406800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0383490.0BT038349.1 Zea mays full-length cDNA clone ZM_BFb0228B20 mRNA, complete cds.
GenBankKJ7269340.0KJ726934.1 Zea mays clone pUT3480 MADS transcription factor (MADS69) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456860.11e-117MADS-box transcription factor 51 isoform X1
SwissprotQ9XJ613e-75MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLC5XGC11e-116C5XGC1_SORBI; Uncharacterized protein
STRINGSb03g044170.11e-117(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-29AGAMOUS-like 20
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]