PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G402000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 428aa    MW: 46360.3 Da    PI: 8.5817
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G402000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.3e-107096127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                          ++++ C +++rtG C++G +C+F+H+p
  Sobic.003G402000.1.p 70 PGEPDCTYYLRTGLCRFGMSCRFNHPP 96
                          5789*********************97 PP
2zf-CCCH38.12.6e-12117141327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           +++C+++++tGtCk+G++CkF+H++
  Sobic.003G402000.1.p 117 QPECQYYLKTGTCKFGPTCKFHHPR 141
                           799********************96 PP
3zf-CCCH31.62.8e-10163187327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           +++C ++++tG+Cky ++CkF+H++
  Sobic.003G402000.1.p 163 EKECAYYLKTGQCKYANTCKFHHPE 187
                           679********************96 PP
4zf-CCCH39.68.4e-13314339227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C+++++tG Ck+G+ CkF+H++
  Sobic.003G402000.1.p 314 DEPECQYYMKTGDCKFGAVCKFHHPR 339
                           789*********************96 PP
5zf-CCCH41.81.7e-13359384126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +++elC+f++r+G+Ck+G++CkF H+
  Sobic.003G402000.1.p 359 PGEELCKFYSRYGICKFGANCKFDHP 384
                           689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.0E-56996IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9716997IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-87196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-57497IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-47595IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6114141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694114142IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-10117141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6118143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-5120142IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4160187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61160188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5160187IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-7163187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4166186IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5312339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695312340IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9314339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5315339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4318338IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7358385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413358386IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6359385IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10360384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5362383IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MDDAGRAPPP APAAVTVSAT AAPAPPPPSA TAAADKSSPD PEALYEEGMW QQMAMNSGAT  60
MQPGSYPERP GEPDCTYYLR TGLCRFGMSC RFNHPPDRNL AIASARMKGE YPERVGQPEC  120
QYYLKTGTCK FGPTCKFHHP REKAGIAGRV QLNTLGYPLR PNEKECAYYL KTGQCKYANT  180
CKFHHPELFN VVPSSRGSPI YTSVHSSASA GPQSYTGTMP SWAFPRASFI PSPRWQSPSN  240
YAPMIVPQGL VQVPSWNSYP GQLQSPGAQQ TYGSSQQGES SAGNQGMLSP YRSSSFPVPQ  300
YALQRDNVFP ERPDEPECQY YMKTGDCKFG AVCKFHHPRV RSLPPPDCVL SPMGLPIRPG  360
EELCKFYSRY GICKFGANCK FDHPTMAAPM GVYAYGFSAS GSPASASTNV PMARRLLGSP  420
SASGYTS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.13450.0leaf| panicle| pollen| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G402000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370350.0BT037035.1 Zea mays full-length cDNA clone ZM_BFb0152E14 mRNA, complete cds.
GenBankJX4284670.0JX428467.1 Zea mays subsp. mays clone pUT3062 C3H49 C3H type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312643.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1B6Q7U10.0A0A1B6Q7U1_SORBI; Uncharacterized protein
STRINGSb03g043810.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-148zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]