PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G398600.1.p
Common NameSb03g043520, SORBIDRAFT_03g043520
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 343aa    MW: 36292.4 Da    PI: 4.5475
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G398600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF245.1e-0823551244
                          HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstg 44
                           f+kR++++  KA EL + C+++vav+  ++ g
  Sobic.003G398600.1.p 23 KFAKRKETLRNKAGELVTRCNVDVAVVCTGPGG 55
                          69**************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.63E-121590IPR002100Transcription factor, MADS-box
PfamPF003192.1E-81955IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPRGKAGRTS ATATATPHAR LAKFAKRKET LRNKAGELVT RCNVDVAVVC TGPGGVGDLD  60
CWPSKAAVDA VVRRYNALEP AERARLKEDL ADLVASEVAK EREKLTRTRE SGLANAFGSY  120
DGSLEGMSEE KLRELLASIE GALVAARGRA LKLRAPPGGA ADRATLSPGL VHDHEAAEED  180
SASATNNVVP PPTELPRGEA DAGGGGLGPP PSGKDPNPPN AVPVDTGEEE VVAENIVTGE  240
DPGDEVQILQ PPGDADADAD DAEWMRSLVD DLKKKPQPHN PAGIEYINVG NSWMERDAYD  300
FIRFDLGMPP PGVAPRNYLD DGGDGEPLKL WSWDNTMPHP PK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G398600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819832.11e-121uncharacterized protein LOC112896014
TrEMBLA0A1W0W1530.0A0A1W0W153_SORBI; Uncharacterized protein
STRINGSb03g043520.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1587778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.16e-10AGAMOUS-like 82