PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G365600.1.p
Common NameSb03g040730, SORBIDRAFT_03g040730
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 206aa    MW: 22779.1 Da    PI: 7.8664
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G365600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.4e-14138182347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +W++eE+ l++++ +++G g+W+ I+r    +Rt+ q+ s+ qky
  Sobic.003G365600.1.p 138 PWSEEEHRLFLQGLEKYGRGDWRNISRFSVRTRTPTQVASHAQKY 182
                           7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00782880IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-52977IPR009057Homeodomain-like
SuperFamilySSF466894.91E-103077IPR009057Homeodomain-like
CDDcd001672.54E-43169No hitNo description
PROSITE profilePS500906.6553178IPR017877Myb-like domain
PROSITE profilePS5129417.879130187IPR017930Myb domain
SuperFamilySSF466892.51E-17133186IPR009057Homeodomain-like
SMARTSM007173.6E-11135185IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.8E-17135186IPR006447Myb domain, plants
PfamPF002491.0E-11138182IPR001005SANT/Myb domain
CDDcd001671.80E-11138183No hitNo description
Gene3DG3DSA:1.10.10.604.1E-12138187IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEFHHRYHSG GSIHAAGPPA AVAAAAAAAR PWSKAEDKVF ESALVMWPDH APDRWALVAA  60
QLPGRTPREA WEHYEALVAD VDLIERGAVD VPSCWDDDDD DADQVSGGRS GGQERGGPGR  120
RAGAADRSRR EGRRPGIPWS EEEHRLFLQG LEKYGRGDWR NISRFSVRTR TPTQVASHAQ  180
KYFNRQLNPA SRDSKRKSIH DITTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-162293172RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G365600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794360.0HF679436.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB30 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456680.11e-148transcription factor DIVARICATA
SwissprotQ8S9H73e-48DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLC5XQK51e-146C5XQK5_SORBI; Uncharacterized protein
STRINGSb03g040730.11e-147(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-43Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]