PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G365500.1.p

Common Name

Sb03g040720, SORBIDRAFT_03g040720

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NAC

Protein Properties

Length: 306aa MW: 33016.5 Da PI: 5.2064

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G365500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.8	6.8e-43	5	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratks 80 lppG+rF Pt+eel+++yL++k+++ + ++e+vi+ vd+y+v+Pw+Lp +++e + w++F++r++++a+g r++r+t s Sobic.003G365500.1.p 5 LPPGYRFYPTEEELISFYLRNKLDNLRrDDIERVIPVVDVYSVDPWQLPGihemlrggGAAGEGEPWFYFCPRQEREARGGRPSRTTPS 93 79********************9985677788***********54677766544447789******************* PP NAM 81 gyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWka g+ v+s+ +++++g+kkt+vfy+grap+g+kt+W m+eyr+ Sobic.003G365500.1.p 94 GYWKAAGTPGVVYSSsaapaDRRAIGMKKTMVFYRGRAPSGTKTNWKMNEYRA 146 **********9888887888*************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-47	4	152	IPR003441	NAC domain
PROSITE profile	PS51005	47.45	5	202	IPR003441	NAC domain
Pfam	PF02365	7.4E-24	6	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAGGLPPGYR FYPTEEELIS FYLRNKLDNL RRDDIERVIP VVDVYSVDPW QLPGIHEMLR 60 GGGAAGEGEP WFYFCPRQER EARGGRPSRT TPSGYWKAAG TPGVVYSSSA APADRRAIGM 120 KKTMVFYRGR APSGTKTNWK MNEYRALQYD EAPAGPAAVG TDGSSSSSST AHHHHAVPVP 180 PPPPNVAPQL RSEFSLCRLY TKSGSLRQFD RRPLGAAGGV VVVPGEDPAG PSTAGVAASP 240 PDDDDGSGSS SMQQQQRQQV TEERAANDPY GDDMVVTTER EDAHGHDPFG DDVAILDALL 300 YWPGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-31	5	148	17	144	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-31	5	148	17	144	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-31	5	148	17	144	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-31	5	148	17	144	NO APICAL MERISTEM PROTEIN
3swm_A	1e-30	5	148	20	147	NAC domain-containing protein 19
3swm_B	1e-30	5	148	20	147	NAC domain-containing protein 19
3swm_C	1e-30	5	148	20	147	NAC domain-containing protein 19
3swm_D	1e-30	5	148	20	147	NAC domain-containing protein 19
3swp_A	1e-30	5	148	20	147	NAC domain-containing protein 19
3swp_B	1e-30	5	148	20	147	NAC domain-containing protein 19
3swp_C	1e-30	5	148	20	147	NAC domain-containing protein 19
3swp_D	1e-30	5	148	20	147	NAC domain-containing protein 19
4dul_A	8e-31	5	148	17	144	NAC domain-containing protein 19
4dul_B	8e-31	5	148	17	144	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G365500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456679.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	6e-63	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	C5XQK4	0.0	C5XQK4_SORBI; Uncharacterized protein
STRING	Sb03g040720.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140
Representative plant	OGRP2278	11	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-61	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Sobic.003G365500.1.p
Entrez Gene	8062364

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]