PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G363200.1.p
Common NameSb03g040490, SORBIDRAFT_03g040490
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 404aa    MW: 43507.6 Da    PI: 6.6006
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G363200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-05246265120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           + C+ C+k+F+r  n++ H+
  Sobic.003G363200.1.p 246 FICHVCNKTFNRYNNMQMHM 265
                           89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-5242269No hitNo description
Gene3DG3DSA:3.30.160.603.2E-5246265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.201246273IPR007087Zinc finger, C2H2
PROSITE patternPS000280248268IPR007087Zinc finger, C2H2
SuperFamilySSF576675.97E-5314350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MGPRTCAAME GEAVGGSPFF QWLKPRRSSS PSSSRSSSGS SSSSSSTTMA ASAGHHVLAA  60
LGEEGQSAAG GVVQEAVRPS SMTCLPLLSR LGEGKGASDD HEQQCTVKEE IMSGGGDGGA  120
TSDLAKSGVD LNIGLPVGGS CSIEDAIMEE KGDEEEEDDE VDQEAGEDES EEWKHMHGGC  180
KVEGMDLQQE DDDREVVPSS VDGRSNNIVV GVGEFGVVGE ESGLPIAGCQ YWIPTPAQIL  240
IGPVQFICHV CNKTFNRYNN MQMHMWGHGR EYRKGPESLK GTQTLALLKL PCYCCAAGCK  300
NNVAHPRARP LKDFRTLQTH YKRKHGAKPF RCRRCAKPFA VKGDWRTHEK NCGKRWFCAC  360
GSDFKHKRSL NDHVRSFGAD HGPVDEPAAA AGAKDRIVRF HNR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.203610.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G363200.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0643340.0AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458800.10.0protein TRANSPARENT TESTA 1
TrEMBLC5XQI10.0C5XQI1_SORBI; Uncharacterized protein
STRINGSb03g040490.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.14e-93WIP domain protein 5