PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G350900.1.p
Common NameSb03g039380, SORBIDRAFT_03g039380
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WOX
Protein Properties Length: 341aa    MW: 36256.5 Da    PI: 8.9187
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G350900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-1946105357
                           --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                            R+++tkeq+ +Le l+e   r+psae++++++ +l     ++ ++V++WFqN++a++++
  Sobic.003G350900.1.p  46 ARWNPTKEQVAVLEGLYEHgLRNPSAEQIQQITGRLrehgAIEGKNVFYWFQNHKARQRH 105
                           7*****************99**************************************95 PP
2Wus_type_Homeobox109.12.5e-3545107365
     Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                           ++RW+Pt+eQ+ +Le ly++Glr+P++e+iq+it +L+e+G+ie+kNVfyWFQN+kaR+r++q
  Sobic.003G350900.1.p  45 NARWNPTKEQVAVLEGLYEHGLRNPSAEQIQQITGRLREHGAIEGKNVFYWFQNHKARQRHRQ 107
                           78**********************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.15541106IPR001356Homeobox domain
SMARTSM003898.4E-643110IPR001356Homeobox domain
PfamPF000464.5E-1746105IPR001356Homeobox domain
SuperFamilySSF466891.8E-1246113IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-746110IPR009057Homeodomain-like
CDDcd000861.33E-547107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEMPPQQAAA AAANANANAN GAAHGQDEGG SSSPPLSPAS AALANARWNP TKEQVAVLEG  60
LYEHGLRNPS AEQIQQITGR LREHGAIEGK NVFYWFQNHK ARQRHRQKQD SFAYFTTLLR  120
RPPPLPVLPM QPAPPYLHGR VPSPSPSPAP APTAIAMPPP PPPPSPAACN NNNNNNNNGG  180
ARVMYRNAFY MPAPQAPPAN AAYYYPPPQQ QVTVMYQYPR MELGQDKMMM TTAAAQQYPA  240
VMFQQAGAAA TNGAGPAERV GPRRETLELF PLKPTFVLRR DKGRAGGGSA SALTSASTAT  300
ASASASEESE GLESGNCNGE EQEAPALPFY DFFGLQSGGR *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G350900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902351e-134AM490235.1 Zea mays mRNA for putative wuschel homeobox protein (wox2A gene).
GenBankBT0370091e-134BT037009.1 Zea mays full-length cDNA clone ZM_BFb0151I01 mRNA, complete cds.
GenBankEU9540621e-134EU954062.1 Zea mays clone 1453569 homeobox domain containing protein mRNA, complete cds.
GenBankKJ7283841e-134KJ728384.1 Zea mays clone pUT6667 HB transcription factor (HB94) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458739.10.0WUSCHEL-related homeobox 5
SwissprotA2WWU74e-47WOX5_ORYSI; WUSCHEL-related homeobox 5
SwissprotQ8LR864e-47WOX5_ORYSJ; WUSCHEL-related homeobox 5
TrEMBLA0A1W0W0B70.0A0A1W0W0B7_SORBI; Uncharacterized protein
STRINGSb03g039380.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Representative plantOGRP85821116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.14e-32WUSCHEL related homeobox 2