PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G281300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 739aa    MW: 84080.7 Da    PI: 7.37
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G281300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-1710105297
                           EEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           fkvl    v   +r+ +p  f+ ++        g    +s +++l++ +g+sW+v+l  +  +g+++lt+GW  Fv++n L  g+f++F
  Sobic.003G281300.1.p  10 FKVL----VDFARRIEIPQAFLCHFpegrhrqsGTTMVTSAKVVLMNAQGNSWSVEL--EEIDGHVFLTTGWPTFVEDNCLGKGEFLIF 92 
                           5555....444556889999986668877777655555899****************..****************************** PP

                           EE-SSSEE..EEEEE CS
                    B3  83 kldgrsefelvvkvf 97 
                           k+dgr+ f   v++f
  Sobic.003G281300.1.p  93 KYDGRMHF--IVSFF 105
                           ****9999..88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.88E-173108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-183107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.6615108IPR003340B3 DNA binding domain
CDDcd100173.63E-187105No hitNo description
SMARTSM010192.6E-169108IPR003340B3 DNA binding domain
PfamPF023629.1E-1517105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MEEPRRPRFF KVLVDFARRI EIPQAFLCHF PEGRHRQSGT TMVTSAKVVL MNAQGNSWSV  60
ELEEIDGHVF LTTGWPTFVE DNCLGKGEFL IFKYDGRMHF IVSFFGVNAV EKSSSWSGSQ  120
ATENVEGELA CPVIPSRKGG HSGDGLITEK VKDFMHTHSQ TDTMKRNTDE HISSQGTIGF  180
LDSHEVICSK DYLETYWSQS ETMEDDKAKA VAEVMRTLRV DKLTVDLFCA ILCLHKWKVE  240
AAAEYFNVCR GKPQILEQSL KQKFVLQLDF VKGQLQRFFP QDYDSERIKK NNVERPNLSN  300
QPLQRDLMVA PVKRRLVDEY KPCDLSHRQK RIVKLQGNSL QTQTPRRSPR LAHANNTCNN  360
NKKVWKGRAK VLKTPPEATN QVKDRAHESC SLHEKLDNAL KAVHEEATGS LSQDIRILDS  420
PRCEVGLSKE HEHDQGDTGK MLDQVNDGEN CKEHLGRDAM GNSESFMSTY CVESLPNSSR  480
LTASSRINEL SFTWKPSQHV SPLDKVLLGI QRDNFVNTIA HIQKIIRDDP SDVLSADVIE  540
ATVRIEIIKW DLCLQDKDAH KIVNAMLEYA KKVKGRQNFN TEMRKEEFSA KLQDLLKWQL  600
KELELTYTSL ESDYKKATTD ASIFFSTFEE HKKKLNAIKD GIKGVQQACM IKDDEMQKLA  660
HQVAEHETAY QKSIMEKVRV KMALKSHEQT IGYVKEHLAS TESGSIDVGA LVKIEMDNMS  720
KEIDVSKGNL LNINFKKE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G281300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456271.20.0B3 domain-containing protein Os03g0120900 isoform X1
RefseqXP_021311479.10.0B3 domain-containing protein Os03g0120900 isoform X1
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A1W0VZ830.0A0A1W0VZ83_SORBI; Uncharacterized protein
STRINGSb03g033280.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Representative plantOGRP1435744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.15e-13B3 family protein