PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G253500.1.p
Common NameSb03g030880, SORBIDRAFT_03g030880
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 318aa    MW: 34638.1 Da    PI: 10.1561
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G253500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.57.3e-1318103185
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                           +W++ e+ aL++a  ++  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++ +       s ++++
  Sobic.003G253500.1.p  18 CWSEGETAALVDAWGSRYLDLNRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGGP------SPWAFY 100
                           7*******************************************999999********************9998775......346666 PP

              trihelix  83 dql 85 
                            ql
  Sobic.003G253500.1.p 101 GQL 103
                           666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.1E-2416104No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYLDLNR GSLRQPQWRE VADAVNSRPG  60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGPSPWAFY GQLDLLVGPT LTGSKKPSPP  120
RAALPVFRRR QTPPRSPSPQ SPPPLPMALP LHNYRRGSDL PSANLIHKAA AAAAAAAAES  180
DSEDGYNNND YDDDEGSQQS PSRSVSSGSG AAAAAAPAVG SKRKMISGSG GFGELARAIE  240
TFADMYERME AAKQRHAEEM ERQRIKFLKD LELKRMQAFV DMQLQLARAK HARKGDASSE  300
MLMSLAALPF LSSPAYL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G253500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278550.0KJ727855.1 Zea mays clone pUT5900 trihelix transcription factor (THX17) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458303.10.0trihelix transcription factor ASIL2
TrEMBLC5XG360.0C5XG36_SORBI; Uncharacterized protein
STRINGSb03g030880.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-29sequence-specific DNA binding transcription factors