PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G251700.2.p | ||||||||
Common Name | Sb03g030740, SORBIDRAFT_03g030740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ARF | ||||||||
Protein Properties | Length: 674aa MW: 73888.3 Da PI: 6.539 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.8 | 2.4e-24 | 146 | 247 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F Sobic.003G251700.2.p 146 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL 233 99****************************963.3445679************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 + +++ l+++v+r+ Sobic.003G251700.2.p 234 --RGEDGVLRLGVRRA 247 ..34899899999986 PP | |||||||
2 | Auxin_resp | 103.2 | 3.3e-34 | 272 | 352 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a++t++vF+++YnPr s+seF+v+++k+ ++l++++svGmR +m++e++d+serr++G+++g ++++p W +SkW++L Sobic.003G251700.2.p 272 VAQAVATRTVFHIYYNPRLSQSEFIVPYWKFTRSLNQPISVGMRCRMRYESDDASERRCTGIIIGSREAEP-IWYGSKWKCL 352 6899*******************************************************************.8********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.45E-42 | 138 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-40 | 142 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.78E-23 | 144 | 246 | No hit | No description |
PROSITE profile | PS50863 | 13.394 | 146 | 248 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.1E-23 | 146 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-22 | 146 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-29 | 272 | 352 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MAGIDLNTVE EEDEEEAEAE APPVAARAGG GAVCLELWHA CAGPVAPLPR KGSAVVYLPQ 60 GHLEHIGGDA DAAGAAVPPH VLCRVVDVTL HADGATDEVY ARVSLLPEDE EAERRARARV 120 REDEDADRDG EDGAAMKPLA RTPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYSQQ 180 RPSQELVAKD LHGTEWKFRH IYRGQPRRHL LTTGWSAFVN KKKLVSGDAV LFLRGEDGVL 240 RLGVRRAAQL KIVTPIPALH NQCSSQTTLG NVAQAVATRT VFHIYYNPRL SQSEFIVPYW 300 KFTRSLNQPI SVGMRCRMRY ESDDASERRC TGIIIGSREA EPIWYGSKWK CLVVRWDDGI 360 ECHWPNRVSP WEIEVTGSVS GSHMCAPNSK RLKPCLPQVN PEIVLPNGSV SSDFAGSVRF 420 HKVLQGQELL GLKTHDGIPR LGVRSPNGIP GFPYHCSGFG ESQRFQKVLQ GQEVFRPFRG 480 GCLADGHIRT AGMYQPKWPA PQGCDFPQPA KPVLVLQASS PSSVLMFPQT GSKITPLEYE 540 YSCLDKDEDG RFDRTVPTQD MGRNNQTLSL WPHLVSGEAI EECTGTENMH SSVSGAEHES 600 NNESTVENGC KIFGISLAEK IRSCDEADSC SAKRNSGLQP SRSQILGSCW ATVHEHRSVV 660 GRVVDVSATD MMI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldx_A | 1e-113 | 32 | 385 | 18 | 363 | Auxin response factor 1 |
4ldx_B | 1e-113 | 32 | 385 | 18 | 363 | Auxin response factor 1 |
4ldy_A | 1e-113 | 32 | 382 | 18 | 361 | Auxin response factor 1 |
4ldy_B | 1e-113 | 32 | 382 | 18 | 361 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G251700.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069005 | 0.0 | BT069005.1 Zea mays full-length cDNA clone ZM_BFb0119L19 mRNA, complete cds. | |||
GenBank | JX428508 | 0.0 | JX428508.1 Zea mays subsp. mays clone pUT3106 ARF12 ARF type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310839.1 | 0.0 | LOW QUALITY PROTEIN: auxin response factor 2 | ||||
Swissprot | Q0JKI9 | 0.0 | ARFB_ORYSJ; Auxin response factor 2 | ||||
TrEMBL | A0A1W0VYW8 | 0.0 | A0A1W0VYW8_SORBI; Auxin response factor | ||||
STRING | Sb03g030740.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-153 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G251700.2.p |
Entrez Gene | 8080830 |
Publications ? help Back to Top | |||
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