PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G242800.2.p
Common NameSb03g029920, SORBIDRAFT_03g029920
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 347aa    MW: 35974.1 Da    PI: 6.9225
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G242800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.34.8e-26143204159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDg +WrKYGqK++ g+++prsY+rCt++   +C++ k+v+r++ dp +++++Y+g H++ 
  Sobic.003G242800.2.p 143 LDDGLSWRKYGQKDILGAKYPRSYFRCTHRhtqSCQASKQVQRTDGDPLLFDVVYHGAHTCA 204
                           58***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-27130204IPR003657WRKY domain
SuperFamilySSF1182901.28E-24137204IPR003657WRKY domain
PROSITE profilePS5081120.518138201IPR003657WRKY domain
SMARTSM007742.9E-38143205IPR003657WRKY domain
PfamPF031067.7E-25144203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEGGVPEEKC ALVAELVQVL EMARQLETHM AVVVQQQQQG GGGAGGGADQ RYRALVSTMR  60
ASIDRAVHMA VSCCAEGRPG TGQLPESPPS GGDGSSPRSG GSDHAGELRG RGNAAAGQCK  120
KRKTLPKWST QVRVSAVQDV SPLDDGLSWR KYGQKDILGA KYPRSYFRCT HRHTQSCQAS  180
KQVQRTDGDP LLFDVVYHGA HTCAQGAAAH PSNQQPAVQE QTTSPSPGFE AGTAVLPFSL  240
RPASNKPTTG ADAAATSSRF VTTGCVSVTA SPFLSPATPE SQLVSSSSSG YAVGGGGGVA  300
MAGVRNVPDV ELASTTNSPM AMGEMDFMFP LDAADFLELG NPASYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-21140203568OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G242800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458250.10.0probable WRKY transcription factor 41
TrEMBLC5XFA60.0C5XFA6_SORBI; Uncharacterized protein
STRINGSb03g029920.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-38WRKY family protein