PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G218700.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

LSD

Protein Properties

Length: 887aa MW: 92275.8 Da PI: 4.1577

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G218700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.6	4.6e-14	833	857	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+tlL+YP+GAp+V+C++C +V Sobic.003G218700.1.p 833 CGQCDTLLMYPFGAPAVKCSNCLFV 857 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.6E-9	792	822	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.2E-6	795	819	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.7E-7	831	858	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.1E-11	833	857	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 887 aa Download sequence Send to blast
MAASPGTAEP LESSTTEHPG AVQLPPLPID EAEPSPPLLG AAAAHEAISP RKSASPSPLP 60 ANMAVEVSPE VEASSSSPSP SPSPSQSPQI VEASPGAPKP LSPPRTAPAA AERASTDLSI 120 TEAVAMASQE GARPSPSPES MDAHLHTASA PLTPPMEIGP GGLLPQQQPQ PPSPEMAPPL 180 CDYSEPAQPS PLCHPDECTG ASPDAPVDEV VAGTSGKAAR PSPCENSEFA QLPQPHLPAE 240 STYVCSNAAG KVSAVASEDG TQPAMESIDS EGPLEIGVQR SLQEPEETTT PSRMEAEPCS 300 PEMAPPGFED CKSQWLPLSD PNPLVESTHT VVQVTATNAM DTTPDTATGS LSPGLLPLLK 360 RGAEGQHPRS CSPTTEAEPG SPDMPPPGFE NCKSSWLPLP TLQPVAETTY VSHDVAPTKT 420 MAVGFMEKAC SVVALERTDV EIDSERSLLP PLESGTGSSL QGPLPRLPSP MMRAIPCSPD 480 TAPPGFENLK FTQLPPPSLP LVQTAHVLQN SADNEAMSVI SEEAPQPSPA VDAMDLDINA 540 KPVLALPSES KPGKSLPPEP TLLLSHVAQH TTCSLGMVLL GSENIKSSQM LLPALVLPLD 600 QTPDILADAG TKKTVTIEGV CHPPPVAGAT EEANGSVLPP ATENGCEGQS PQLEPQASSP 660 AVDAAATSLE IAPRSFENSE SSQLISPCLA ETIDPSTHAS ATMPVLVKSE KTSLPLSPLQ 720 ATGTDMESTI LQQSPSKSEE RSLAEPEQHL SSPSVKGTTC SPEVAPPGYE NFDSLDQPPP 780 PPPLCSKFEI GQMVCGCCRQ LVAYPRGAVH VQCFGCSTIN LVLEEHQVGK MYCGQCDTLL 840 MYPFGAPAVK CSNCLFVTEI GERNVRPRIL MEQSVSPDPQ EVVHQS*

Sequence ? help Back to Top

Protein Sequence Length: 887 aa Download sequence Send to blast

MAASPGTAEP LESSTTEHPG AVQLPPLPID EAEPSPPLLG AAAAHEAISP RKSASPSPLP  60
ANMAVEVSPE VEASSSSPSP SPSPSQSPQI VEASPGAPKP LSPPRTAPAA AERASTDLSI  120
TEAVAMASQE GARPSPSPES MDAHLHTASA PLTPPMEIGP GGLLPQQQPQ PPSPEMAPPL  180
CDYSEPAQPS PLCHPDECTG ASPDAPVDEV VAGTSGKAAR PSPCENSEFA QLPQPHLPAE  240
STYVCSNAAG KVSAVASEDG TQPAMESIDS EGPLEIGVQR SLQEPEETTT PSRMEAEPCS  300
PEMAPPGFED CKSQWLPLSD PNPLVESTHT VVQVTATNAM DTTPDTATGS LSPGLLPLLK  360
RGAEGQHPRS CSPTTEAEPG SPDMPPPGFE NCKSSWLPLP TLQPVAETTY VSHDVAPTKT  420
MAVGFMEKAC SVVALERTDV EIDSERSLLP PLESGTGSSL QGPLPRLPSP MMRAIPCSPD  480
TAPPGFENLK FTQLPPPSLP LVQTAHVLQN SADNEAMSVI SEEAPQPSPA VDAMDLDINA  540
KPVLALPSES KPGKSLPPEP TLLLSHVAQH TTCSLGMVLL GSENIKSSQM LLPALVLPLD  600
QTPDILADAG TKKTVTIEGV CHPPPVAGAT EEANGSVLPP ATENGCEGQS PQLEPQASSP  660
AVDAAATSLE IAPRSFENSE SSQLISPCLA ETIDPSTHAS ATMPVLVKSE KTSLPLSPLQ  720
ATGTDMESTI LQQSPSKSEE RSLAEPEQHL SSPSVKGTTC SPEVAPPGYE NFDSLDQPPP  780
PPPLCSKFEI GQMVCGCCRQ LVAYPRGAVH VQCFGCSTIN LVLEEHQVGK MYCGQCDTLL  840
MYPFGAPAVK CSNCLFVTEI GERNVRPRIL MEQSVSPDPQ EVVHQS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G218700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455945.2	0.0	proline-rich protein 36
TrEMBL	A0A1B6Q4N4	0.0	A0A1B6Q4N4_SORBI; Uncharacterized protein
STRING	Sb03g027740.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13395	25	25
Representative plant	OGRP14336	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	9e-29	lsd one like 2

Link Out ? help Back to Top
Phytozome	Sobic.003G218700.1.p