PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G216901.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 273aa    MW: 30151.8 Da    PI: 7.7149
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G216901.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.1e-161360249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +ien + r+ t+ kRr g++K A+ LS+L++a+vav++ s++gk+  +
  Sobic.003G216901.1.p 13 FIENGRDRSLTYFKRRSGLFKAASDLSTLTGARVAVVLESEHGKFSSF 60
                          8*******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-11363IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.353464IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-9626IPR002100Transcription factor, MADS-box
CDDcd001201.06E-16763No hitNo description
SuperFamilySSF554551.18E-161073IPR002100Transcription factor, MADS-box
PfamPF003191.1E-171360IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-92641IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-94162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVPRRDRRSG VRFIENGRDR SLTYFKRRSG LFKAASDLST LTGARVAVVL ESEHGKFSSF  60
GTPEASPILD AFLLGSAPTD LDTSEAEKAS ITNLQNEVFQ LEKEKTMEDK RKKESMARTN  120
KNIQEASKMA KYVYGNIEDL DATELFDMYR ELSRVKQEIN DRLPTLLHDD KVEVGGRLRD  180
PSLLLPTWWR SMPPPQVATP QKYPWAPFQA CFQQHPWSST SAAALASGGT QVGDGQSDGG  240
FDRVMPKSFS TGESSGGGNA AVNLGGHNFH LY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G216901.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311921.11e-166uncharacterized protein LOC8084810
TrEMBLA0A1W0VYF10.0A0A1W0VYF1_SORBI; Uncharacterized protein
STRINGSb03g027570.11e-138(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Representative plantOGRP9531413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.17e-13AGAMOUS-like 28