PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G01530.1 | ||||||||
Common Name | AGL28, F22L4.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28029.6 Da PI: 9.8146 | ||||||||
Description | AGAMOUS-like 28 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.6 | 1.4e-22 | 17 | 62 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n+sn qvtfskRr g++KK +EL++LCdae+a+i+fs++gk y + AT1G01530.1 17 TNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62 699***************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.3E-34 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.609 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-26 | 7 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.35E-32 | 7 | 73 | No hit | No description |
PRINTS | PR00404 | 1.1E-20 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-24 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-20 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-20 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000036 | anatomy | leaf vascular system | ||||
PO:0005660 | anatomy | hydathode | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020090 | anatomy | embryo sac central cell | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MARKNLGRRK IELVKMTNES NLQVTFSKRR SGLFKKGSEL CTLCDAEIAI IVFSPSGKAY 60 SFGHPNVNKL LDHSLGRVIR HNNTNFAESR TKLRIQMLNE SLTEVMAEKE KEQETKQSIV 120 QNERENKDAE KWWRNSPTEL NLAQSTSMKC DLEALKKEVD EKVAQLHHRN LNFYVGSSSN 180 VAAPAAVSGG NISTNHGFFD QNGNSTSAPT LPFGFNVMNR TPAGYNSYQL QNQEVKQVHP 240 QYWARYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 7e-16 | 6 | 71 | 1 | 66 | MEF2 CHIMERA |
6byy_B | 7e-16 | 6 | 71 | 1 | 66 | MEF2 CHIMERA |
6byy_C | 7e-16 | 6 | 71 | 1 | 66 | MEF2 CHIMERA |
6byy_D | 7e-16 | 6 | 71 | 1 | 66 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.42643 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 259427_at | 0.0 | ||||
Expression Atlas | AT1G01530 | - | ||||
AtGenExpress | AT1G01530 | - | ||||
ATTED-II | AT1G01530 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the embryo at the globular stage and in endosperm nuclei and chalazal endosperm of developing seeds. {ECO:0000269|PubMed:16899218}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves and shoot apices. {ECO:0000269|PubMed:16899218}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function as a floral promoter operating upstream of known floral activators in the autonomous pathway. {ECO:0000269|PubMed:16899218}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G01530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- ATRM (Manually Curated Target Genes) ? help Back to Top | ||||||
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Source | Target Gene (A: Activate/R: Repress) | |||||
ATRM | AT4G02560(A), AT4G16280(A) |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G31630, AT1G65300, AT1G65330 | |||||
IntAct | Search Q9LMM8 |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:16899218}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G01530 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ446218 | 0.0 | DQ446218.1 Arabidopsis thaliana clone pENTR221-At1g01530 MADS-box protein (At1g01530) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_171660.1 | 0.0 | AGAMOUS-like 28 | ||||
Swissprot | Q9LMM8 | 0.0 | AGL28_ARATH; Agamous-like MADS-box protein AGL28 | ||||
TrEMBL | A0A178WE04 | 0.0 | A0A178WE04_ARATH; AGL28 | ||||
STRING | AT1G01530.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17507 | 7 | 10 | Representative plant | OGRP16 | 17 | 761 |
Link Out ? help Back to Top | |
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Phytozome | AT1G01530.1 |
Entrez Gene | 837142 |
iHOP | AT1G01530 |
wikigenes | AT1G01530 |