PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G211200.1.p
Common NameSb03g027120, SORBIDRAFT_03g027120
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 308aa    MW: 31875.4 Da    PI: 7.7577
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G211200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.7e-14129173347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +W++eE+ +++ + +qlG+g+W+ I+r   ++Rt+ q+ s+ qk+
  Sobic.003G211200.1.p 129 PWSEEEHRQFLAGLEQLGKGDWRGISRNYVTTRTPTQVASHAQKF 173
                           8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.337122178IPR017930Myb domain
SuperFamilySSF466892.69E-17123179IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-17125177IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.9E-10126169IPR009057Homeodomain-like
SMARTSM007171.2E-10126176IPR001005SANT/Myb domain
CDDcd001671.44E-9129174No hitNo description
PfamPF002491.4E-10129172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006338Biological Processchromatin remodeling
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0035066Biological Processpositive regulation of histone acetylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0004402Molecular Functionhistone acetyltransferase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MARKCSHCGN YGHNSRTCGL GHSREVMLCE AGDNGGGHGG SGLRLFGVQV RIGGGGAGSS  60
ASMKKSYSMD CLQLAAAQAG CSLVSPSSSS SSSLLLSIEE GLERGAAANG YLSDGPHGRV  120
VQERKKGVPW SEEEHRQFLA GLEQLGKGDW RGISRNYVTT RTPTQVASHA QKFFLRQSSM  180
GKKKRRSSLF DMVPICENSA SISDPVSSEE GAGSTSLSLN VACHCHGAAS DSERAALDLN  240
STEEGGDSRA APGAGTTRPF PAPVAVAQTE LLLHQPSSSS HGQGRGHHCS PLDLELGMSL  300
PAPSIGT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181185KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.132550.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G211200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794480.0HF679448.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB42 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455906.10.0transcription factor MYBS3
TrEMBLC5XQ940.0C5XQ94_SORBI; Uncharacterized protein
STRINGSb03g027120.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.14e-39MYB_related family protein