PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.003G204200.1.p | ||||||||
Common Name | Sb03g026620, SORBIDRAFT_03g026620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 252aa MW: 28607.5 Da PI: 6.955 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.1 | 8.8e-15 | 154 | 243 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 + t s+v+ +l lpk f+++h k ++ t+tl de+ + + + +rk++ l++GWkeF+ + +L +gD +vF+l++r++f Sobic.003G204200.1.p 154 TQPITLSHVTGGFWLDLPKYFCQKHLPK--SDETITLVDEEDDESDTLYLVRKTG----LSTGWKEFAIERKLLDGDCLVFQLIERTKF 236 556677999999*************433..5569*****9999999999777777....9************************98888 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +v ++r+ Sobic.003G204200.1.p 237 --KVYIIRA 243 ..9998886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.3E-21 | 146 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-18 | 148 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.28E-22 | 151 | 242 | No hit | No description |
PROSITE profile | PS50863 | 11.096 | 153 | 244 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-17 | 153 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-12 | 157 | 243 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
MAEAVAYEEQ RRRQIEANKR KLEELQLHHL SAAVREAAAA AKPSSAKKRK AQVPRDAAAE 60 PLRRSGRVAN LPEKPIYREV KVNSPFLQVS KSNASVLWDA ATSVVAEPLR WSGRLANLPE 120 KPMYREDSDE ERSYAISKAD ELVQELGSSF PIFTQPITLS HVTGGFWLDL PKYFCQKHLP 180 KSDETITLVD EEDDESDTLY LVRKTGLSTG WKEFAIERKL LDGDCLVFQL IERTKFKVYI 240 IRATSYFESE Y* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.003G204200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT041782 | 0.0 | BT041782.1 Zea mays full-length cDNA clone ZM_BFb0054E02 mRNA, complete cds. | |||
GenBank | JX428493 | 0.0 | JX428493.1 Zea mays subsp. mays clone pUT3090 ABI48 ABI3VP1 type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455874.1 | 0.0 | B3 domain-containing protein Os06g0194400 | ||||
Swissprot | Q69V36 | 3e-85 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | C5XPJ7 | 0.0 | C5XPJ7_SORBI; Uncharacterized protein | ||||
STRING | Sb03g026620.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 | Representative plant | OGRP995 | 16 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-43 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.003G204200.1.p |
Entrez Gene | 8082176 |
Publications ? help Back to Top | |||
---|---|---|---|
|