PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G203800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | B3 | ||||||||
Protein Properties | Length: 227aa MW: 25629.5 Da PI: 4.4754 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.1 | 1.4e-12 | 140 | 211 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p f+ ++ +++++++tl de+ ++ + + + ++ l++GW +Fv +++L +gD +vF+l++r+ f +v ++r Sobic.003G203800.2.p 140 FPTYFC-KYL--PKRDTMITLVDEEDDKFCMLY--QPSK--AALSTGWGGFVVDHKLLDGDCLVFQLIERTMF--KVYIIR 211 577777.553..346789***************..6666..569************************98777..788877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.94E-17 | 117 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.0E-13 | 118 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.347 | 123 | 213 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-5 | 123 | 213 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.00E-19 | 123 | 211 | No hit | No description |
Pfam | PF02362 | 1.3E-10 | 140 | 212 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MAEAVAYEEQ RRRQIEANKR KLEELQLHHL SATVSEAAAA AVKPSSDSDE ERSDQDSDEE 60 RSDQDSDEER SDQDSDEERS YQDSDERRVC RCIPGIPCGY ATGYAISKAE ELVQKLGSSF 120 HVFTLPMTLF HVTGVFRPGF PTYFCKYLPK RDTMITLVDE EDDKFCMLYQ PSKAALSTGW 180 GGFVVDHKLL DGDCLVFQLI ERTMFKVYII RAASYLKAST DEASSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G203800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021311549.1 | 1e-157 | B3 domain-containing protein Os06g0194400 isoform X1 | ||||
Refseq | XP_021311550.1 | 1e-157 | B3 domain-containing protein Os06g0194400 isoform X2 | ||||
Swissprot | Q69V36 | 1e-62 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A1W0VY64 | 1e-166 | A0A1W0VY64_SORBI; Uncharacterized protein | ||||
STRING | Sb03g026600.1 | 1e-141 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-34 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G203800.2.p |
Publications ? help Back to Top | |||
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