PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G156600.1.p
Common NameSb03g013650, SORBIDRAFT_03g013650
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 447aa    MW: 47307.5 Da    PI: 4.4222
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G156600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.36.5e-161153345
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                          i n + r  tf kR++g+ KKA+ELSvLC++eva++++  +g+
  Sobic.003G156600.1.p 11 IPNRRVRASTFGKRKEGLKKKANELSVLCGVEVALVVAPADGE 53
                          6788999******************************988885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.19E-18153IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.189153IPR002100Transcription factor, MADS-box
CDDcd002662.75E-20247No hitNo description
PRINTSPR004049.7E-10323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGRRKVSMGL IPNRRVRAST FGKRKEGLKK KANELSVLCG VEVALVVAPA DGEGGAGAAT  60
AKAEADVWES KEGVLARYRE LDPEARARHT FRDYLFAELG KEEAKLARVR QAGPDGLDCW  120
DKALDGVDTV EEAQKLLDAI DAAIQAADDR RRALGMPVDD DEDGGGGIVL EGIAPINSAH  180
VNDNDGYLLH ALGGNGGAND EAMDMWGNNG FHQCSAANMQ FGFQQFNSSN VVAMEGYDLQ  240
MVPDMYNNGG LATDAYQYQT CHGGTMQHGY VFPCARASAS YFSMPSGYQM QQVVGSGASQ  300
PNLAMSSADE PCHTMVPVPV LEYPSADTSL NYMDTQATQG VHDSSSGTSF AMDARGNFIN  360
APPAFSVAMS TGGGGGNFIS APPAAPFHSM GGTSDNFTPA QPLAMSYGGD MTTDMTTAGR  420
YATQSGMEQL HYLGDLEDTQ PILWGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G156600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275230.0KJ727523.1 Zea mays clone pUT5382 MADS transcription factor (MADS46) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310887.10.0uncharacterized protein LOC8086331
TrEMBLC5XJU00.0C5XJU0_SORBI; Uncharacterized protein
STRINGSb03g013650.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Representative plantOGRP1164635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.19e-11AGAMOUS-like 36