PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G137500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 243aa MW: 27719.9 Da PI: 10.2849 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.9 | 9.4e-12 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i s+r tf +Rr i KK EL +LC+++v v+++s+++ Sobic.003G137500.1.p 11 ITKASKRRATFRRRRDSIKKKVDELATLCGTKVGVVLYSEDQ 52 667899*********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.558 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.7E-11 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-18 | 3 | 90 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-13 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MVRKKVNLQW ITKASKRRAT FRRRRDSIKK KVDELATLCG TKVGVVLYSE DQAKPLAWPN 60 DSEAKDIFKK FIDMPDLGKR FKKMQNQEEL LSTRIPKLQH QISRLERENY THEISFLLYE 120 SIDGRRPGLI NTTEKERTSL GEMVEEKIKK IKERIRQLQG VALEAHLPLQ LRSSPNQPLA 180 PCTFNEMAVV GRVPPQQQQD WVASLTTNGG ELGTIVSGAF ASSSGGVDMM HPYNMDYFSR 240 FP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVNLQWITKASKRRATFRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G137500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184776 | 1e-157 | KF184776.1 Saccharum hybrid cultivar R570 clone BAC 216L10 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021311802.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1B6Q319 | 0.0 | A0A1B6Q319_SORBI; Uncharacterized protein | ||||
STRING | Sb03g011705.1 | 1e-164 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26650.1 | 8e-16 | AGAMOUS-like 36 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G137500.1.p |