PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G099000.1.p
Common NameSb03g008290, SORBIDRAFT_03g008290
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 291aa    MW: 30541.3 Da    PI: 6.3997
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G099000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.6e-09209250955
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            + RR++i +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  Sobic.003G099000.1.p 209 AKVRREKIAEKLKVLQDLVPNG-----TKVDLVTMLEKAITYVKFLQ 250
                           589*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.335200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-12201258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-12202261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.40E-11202254No hitNo description
SMARTSM003532.3E-10206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-5210250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAQAASKRSA LLRPVMYEDE PSSMSLELFS HGIVVDGDEA DGGSAAAALS LHLAFDDDNF  60
KGGCDASADY YSSWAAYDGS GATSSSSSSV LSFEQAGSGG QHHLAYGEDG CAFWMDPAAG  120
MVEHPAQQQR RSGCNFGLIV SPGSSPDDAG LHIQEPGAVQ LPAKPPHKRA RRDGEVQAAA  180
AKKQCGGGAR KSKAKAAPAP TKDPQSVAAK VRREKIAEKL KVLQDLVPNG TKVDLVTMLE  240
KAITYVKFLQ LQVKVLAADE FWPAQGGKAP ELSQVKDALD AILSSQQYPK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G099000.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455315.10.0transcription factor bHLH69
TrEMBLC5XEV70.0C5XEV7_SORBI; Uncharacterized protein
STRINGSb03g008290.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.18e-44ROOT HAIR DEFECTIVE6