PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G087600.1.p | ||||||||
Common Name | Sb03g007360, SORBIDRAFT_03g007360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 390aa MW: 42243 Da PI: 6.2968 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.2e-17 | 30 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl Sobic.003G087600.1.p 30 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 77 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 5.9e-17 | 83 | 126 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Sobic.003G087600.1.p 83 RGNLTPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 126 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.885 | 25 | 77 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-31 | 27 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 29 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-15 | 30 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 31 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.69E-11 | 32 | 77 | No hit | No description |
PROSITE profile | PS51294 | 26.281 | 78 | 132 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 82 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-16 | 83 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-24 | 85 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.65E-13 | 87 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009686 | Biological Process | gibberellin biosynthetic process | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MSQRKGASMA AAVTSSKHHE DQEMMMELRR GPWTLEEDNL LMNYIACHGE GRWNLLARCS 60 GLKRTGKSCR LRWLNYLKPD IKRGNLTPEE QLLILELHSK WGNRWSRIAQ HLPGRTDNEI 120 KNYWRTRVQK QARQLRVDAN SAVFRDAVRC YWMPRLLEKM AATSTAHDLH GELLPPAPPL 180 HPSHVVAGMA SSSSPIHGSH DHEQDPTSNA PAGSGYYHQR YPVDPSPSTS TTSGSTSAAA 240 LPPVPCFSEL SWVDQYGYGP YSYTTDLDGA AGVSSFDDDS AALESLGLDG LDLGPAEADS 300 DVLYSDTTLL DYLNSTCAGG GTMMTMMGGG VGGGSVVHNS CGGAMGGCGD DVAEYGRPTS 360 SSSWRTDELV FQASARKLGD HQHQWGGGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-26 | 27 | 131 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00216 | DAP | Transfer from AT1G68320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G087600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679427 | 0.0 | HF679427.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB21 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455261.1 | 0.0 | transcription factor MYB2 | ||||
TrEMBL | C5XQX0 | 0.0 | C5XQX0_SORBI; Uncharacterized protein | ||||
STRING | Sb03g007360.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 1e-80 | myb domain protein 62 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G087600.1.p |
Entrez Gene | 8073365 |