PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G053300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 270aa MW: 28898 Da PI: 5.0096 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 7.6e-16 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ +G tW+++a+ g++R++k+c++rw +yl Sobic.003G053300.2.p 22 KGLWSPEEDERLFTQITYHGVSTWSSVAQLAGLRRSGKSCRLRWMNYL 69 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.5 | 1.7e-14 | 77 | 118 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + ++ E+e ++ + + lG++ W+tIa++m+ gRt++++k++w++ Sobic.003G053300.2.p 77 PISKREEETIISLQQSLGNR-WSTIAARMP-GRTDNEIKNYWNS 118 56889***************.*********.***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.968 | 17 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.57E-27 | 21 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-10 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-13 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.21E-9 | 25 | 69 | No hit | No description |
SMART | SM00717 | 6.4E-13 | 74 | 122 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.769 | 74 | 124 | IPR017930 | Myb domain |
CDD | cd00167 | 5.54E-10 | 77 | 117 | No hit | No description |
Pfam | PF00249 | 3.8E-12 | 77 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 77 | 124 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MVRKPIHADA GANGTEANKE RKGLWSPEED ERLFTQITYH GVSTWSSVAQ LAGLRRSGKS 60 CRLRWMNYLR PDLKKEPISK REEETIISLQ QSLGNRWSTI AARMPGRTDN EIKNYWNSRI 120 RKRLNAARDS TAKPAPAPAV GGEEGSANAA PPPADQHVPI PARFPVFGCQ LLDLDGAGGG 180 MSSAGSGSGE SPQSSTTTST QQNTGDESEA SVGGNSSGGG GGDDINMIHF LSFDDLDYYP 240 GDLLMDVPGA MDAWESELYS ANSMMSSLC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 22 | 124 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G053300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971559 | 1e-170 | EU971559.1 Zea mays clone 367166 anthocyanin regulatory C1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021313424.1 | 0.0 | transcription factor MYB82-like | ||||
TrEMBL | A0A1W0VVS1 | 0.0 | A0A1W0VVS1_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G143274_P01 | 1e-120 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8703 | 25 | 45 | Representative plant | OGRP15954 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 2e-47 | myb domain protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G053300.2.p |