PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G049000.1.p
Common NameSb03g004260, SORBIDRAFT_03g004260
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 268aa    MW: 28284.5 Da    PI: 9.0017
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G049000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-0783108127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           ykt+lC  f + G C y d C+FaHg+
  Sobic.003G049000.1.p  83 YKTRLCEKFEA-GKCAYEDGCTFAHGF 108
                           9**********.*************95 PP
2zf-CCCH21.34.9e-07153172625
                           -SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                           C  f+ tG C++GdrC FaH
  Sobic.003G049000.1.p 153 CFEFRDTGACHRGDRCAFAH 172
                           778999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.8E-1576114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-881113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.73282109IPR000571Zinc finger, CCCH-type
SMARTSM003560.01582108IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-583108IPR000571Zinc finger, CCCH-type
SMARTSM003560.0035148174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5151173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5151172IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-5152172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.225152175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MESEGNAAAA GAGAGAGAGN WEAPNGVIVL PAGSAAPRFL QQEPHYLRRK REMEREQQDA  60
EAAGADPGVL GLDLRQPPEK VYYKTRLCEK FEAGKCAYED GCTFAHGFDE LRPPLPVPTA  120
LIRRRSPLRP RSSSPGGAAA DGSQVSGGYL RVCFEFRDTG ACHRGDRCAF AHASVAADMP  180
FPGGPRSVEH ALRNASPYVK AYSSPGSAAS AHRSSSTTSS FAPSSTRAVP SIPADAAGEG  240
RRRKVTRLEL LSRKKTSGIY GDWPGQE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239247GRRRKVTRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G049000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455095.10.0zinc finger CCCH domain-containing protein 1
TrEMBLC5XND40.0C5XND4_SORBI; Uncharacterized protein
STRINGSb03g004260.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Representative plantOGRP10392510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-07C3H family protein