PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G037400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 134aa MW: 14230.7 Da PI: 8.4333 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 32.5 | 1.7e-10 | 88 | 109 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDg++WrKYG+K vk+s++pr Sobic.003G037400.2.p 88 LDDGFKWRKYGKKAVKSSPNPR 109 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-10 | 76 | 109 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-9 | 80 | 110 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.035 | 83 | 109 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.3E-4 | 88 | 126 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-6 | 89 | 110 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MADDYYYYYF QFGEEMGGAR APGCGGGYCS PPAPAFDNGM SLLSYGGVDG DGRRPMSGPA 60 AGTGGNGGGG RPPASRIGFR TRSEVDVLDD GFKWRKYGKK AVKSSPNPRY STIQYDSGDH 120 FSSIPWSRSC MHA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.19080 | 0.0 | shoot |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G037400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ246458 | 2e-97 | GQ246458.1 Saccharum officinarum WRKY transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455037.1 | 2e-72 | probable WRKY transcription factor 50 isoform X1 | ||||
TrEMBL | A0A1W0VVL7 | 3e-91 | A0A1W0VVL7_SORBI; Uncharacterized protein | ||||
STRING | Sb03g003360.1 | 7e-72 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 5e-15 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G037400.2.p |