PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G036600.1.p
Common NameSb03g003270, SORBIDRAFT_03g003270
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 362aa    MW: 38455.3 Da    PI: 8.7436
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G036600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.2e-13105149347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+  ++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  Sobic.003G036600.1.p 105 PWTEEEHRMFLMGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 149
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.19298154IPR017930Myb domain
SuperFamilySSF466891.05E-16100154IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-19101153IPR006447Myb domain, plants
SMARTSM007172.6E-11102152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-12102148IPR009057Homeodomain-like
CDDcd001674.69E-9105150No hitNo description
PfamPF002491.1E-10105149IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPA RSGGGVRLFG VRLTTAPAPA AMKKSASMSC IASSLGGGSG  60
GSSPPAGGVG GGRGGGDGGA GYVSDDPGHA SCSTNGRVER KKGTPWTEEE HRMFLMGLQK  120
LGKGDWRGIS RNFVVSRTPT QVASHAQKYF IRQTNSSRRK RRSSLFDMVA EMPVDESLAA  180
AEQITIQNTQ DEAASSNQLP TLHLGHQKEA EFAKQMPTFQ LRQHEESEYA EPSLTLPDLE  240
MNSSVPFNTI AVPTMPAFYP ALVPVPLTLW PPSVAHVEDA GTTHEILKPT PLNGKEVIKA  300
DDVVGMSKLS IGEASSGSME PTALSLQLIG STDTRQSAFH VSPPMNRPEL SKRNSSPIHA  360
V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G036600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0382700.0BT038270.1 Zea mays full-length cDNA clone ZM_BFb0221P08 mRNA, complete cds.
GenBankEU9652590.0EU965259.1 Zea mays clone 284869 myb-related transcription activator mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455032.10.0transcription factor MYBS3
TrEMBLC5XM040.0C5XM04_SORBI; Uncharacterized protein
STRINGSb03g003270.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-74MYB_related family protein